View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16560_high_6 (Length: 441)

Name: NF16560_high_6
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16560_high_6
NF16560_high_6
[»] chr3 (1 HSPs)
chr3 (19-441)||(1503771-1504193)
[»] chr8 (5 HSPs)
chr8 (74-441)||(2923579-2923949)
chr8 (23-441)||(37798382-37798800)
chr8 (19-441)||(3009459-3009884)
chr8 (19-441)||(2949524-2949949)
chr8 (19-441)||(2932889-2933314)
[»] chr2 (1 HSPs)
chr2 (23-441)||(28027079-28027500)
[»] chr6 (1 HSPs)
chr6 (65-277)||(4913737-4913949)


Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 1504193 - 1503771
Alignment:
Q  19 ccaatgtcacaacccactcctcgacatccttttttctttcgactaaattttccaacctgaccggaaacttttgcttccacatgtagtagctgcattcctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1504193 ccaatgtcacaacccactcctcgacatccttttttctttcgactaaattttccaacctgaccggaaacttttgcttccacatgtagtagctgcattcctt 1504094  T
Q  119 cccggcttcactattttcctcggcggagagatggagtgtgtaagactcagcattaatgtttttcctagtcacaaaattaatctcgcttgaaatagatacg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1504093 cccggcttcactattttcctcggcggagagatggagtgtgtaagactcagcattaatgtttttcctagtcacaaaattaatctcgcttgaaatagatacg 1503994  T
Q  219 gcagttatggtattctgtttggggtcctcattaacttctctgacagaaaggtgtctgattttagtaagaaacaaaagcacttctggatgaatgcttgata 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1503993 gcagttacggtattctgtttggggtcctcattaacttctctgacagaaaggtgtctgattttagtaagaaacaaaagcacttctggatgaatgcttgaca 1503894  T
Q  319 gttgatgcttaacaggttggaccttctccggcttaagtggtaaaatgactattgtagttggaagggaattacaagcaccatatatattctttatgtcagc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1503893 gttgatgcttaacaggttggaccttctccggcttaagtggtaaaatgactattgtagttggaagggaattacaagcaccatatatattctttatgtcagc 1503794  T
Q  419 aagggttggcttctcctcaaccc 441  Q
    |||||||||||||||||||||||    
T  1503793 aagggttggcttctcctcaaccc 1503771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 74 - 441
Target Start/End: Original strand, 2923579 - 2923949
Alignment:
Q  74 cctgaccggaaacttttgcttccacatgtagtagctgcattccttcccggcttcactattttcctcggcggagagatggagtgtgtaagactcagcatta 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| || || |||||||||| |||||| || ||||||||     
T  2923579 cctgaccggaaacttttgcttccacatgtagtagctgcattccttctcagcatcactattttcttctgcagagagatggattgtgtaggattcagcattc 2923678  T
Q  174 atgtttttcctagtcacaaaattaatctcgcttgaaatagatacggcagttatggtattctgtttggggtcctcattaacttctctgacagaaaggtgtc 273  Q
    |||||||| |||||||| || |||||||| ||||||||||| ||  ||||||  || ||||||||||| | |||| ||||||| ||||||||||||||||    
T  2923679 atgttttttctagtcacgaagttaatctcacttgaaatagacacatcagttacagtgttctgtttgggattctcactaacttccctgacagaaaggtgtc 2923778  T
Q  274 tgattttagtaagaaacaaaagcacttctggatgaatgcttgatagttgatgcttaacaggttggaccttctccggcttaagtggtaaaatgactattgt 373  Q
    ||||||| ||||| |||| ||| ||||||||||||| |||||| || |  || |||||||||| |||||| |||| ||| || ||||| |  | | ||||    
T  2923779 tgattttcgtaaggaacagaaggacttctggatgaaagcttgagagcttctgtttaacaggttcgaccttatccgacttcagaggtaagacaattgttgt 2923878  T
Q  374 agttggaagggaa---ttacaagcaccatatatattctttatgtcagcaagggttggcttctcctcaaccc 441  Q
    |||| ||||||||   |||| ||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  2923879 agttcgaagggaacctttaccagcgccatatatcttctttatgtcaacaagggttggcttctcctcaaccc 2923949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 441
Target Start/End: Original strand, 37798382 - 37798800
Alignment:
Q  23 tgtcacaacccactcctcgacatccttttttctttcgactaaattttccaacctgaccggaaacttttgcttccacatgtagtagctgcattccttcccg 122  Q
    |||||||||||| || || |||||  || | ||||| || | ||||||  ||||||||||||| |||||||||||||||||||||||||| || ||| |     
T  37798382 tgtcacaacccattcttcaacatctgttctcctttcaaccacattttctgacctgaccggaaatttttgcttccacatgtagtagctgcactctttctca 37798481  T
Q  123 gcttcactattttcctcggcggagagatggagtgtgtaagactcagcattaatgtttttcctagtcacaaaattaatctcgcttgaaatagatacggcag 222  Q
    || | |||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| ||||| || || || ||||||||||||||||| ||||    
T  37798482 gcattactattttcctctgcagagagatgcagtgtgtaagactcagcattcatgtttttcctcgtcacgaagtttatttcgcttgaaatagatacagcag 37798581  T
Q  223 ttatggtattctgtttggggtcctcattaacttctctgacagaaaggtgtctgattttagtaagaaacaaaagcacttctggatgaatgcttgatagttg 322  Q
    |||| || |||||| |||| |  |||  |||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||| |||||| || ||    
T  37798582 ttatagtgttctgtgtgggattttcagcaacttctctgactgaaaggtgtcttatttttgtaagaaacaacaggacttctggatgaacgcttgaaagctg 37798681  T
Q  323 atgcttaacaggttggaccttctccggcttaagtggtaaaatgactattgtagttggaagggaattacaagcaccatatatattctttatgtcagcaagg 422  Q
     || |||||||| | |||||| |||||||| || ||||| |  |   ||||| ||||||||   |||| | |||||||||| | |||||| ||  ||| |    
T  37798682 ctgtttaacagggtcgaccttatccggctttaggggtaagacaatggttgtatttggaaggtctttaccaacaccatatatctgctttatctcgacaatg 37798781  T
Q  423 gttggcttctcctcaaccc 441  Q
    |||||||||||||||||||    
T  37798782 gttggcttctcctcaaccc 37798800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 3009884 - 3009459
Alignment:
Q  19 ccaatgtcacaacccactcctcgacatccttttttctttcgactaaattttccaacctgaccggaaacttttgcttccacatgtagtagctgcattcctt 118  Q
    ||||||||||||| ||||| || ||| || || | ||||| || | |||||||| | |||| |||||||||||||||||||||||||| ||||| |||||    
T  3009884 ccaatgtcacaacacactcttccacaccccttctcctttccaccacattttccagcttgacaggaaacttttgcttccacatgtagtaactgcactcctt 3009785  T
Q  119 cccggcttcactattttcctcggcggagagatggagtgtgtaagactcagcattaatgtttttcctagtcacaaaattaatctcgcttgaaatagatacg 218  Q
         |   |||| ||||  | |  || ||||||| |||||| |||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||     
T  3009784 tttatccctactactttctcccgtagatagatggattgtgtatgacttagcattcatgtttttccttgtcacaaagttaatctcgcttgaaatagataca 3009685  T
Q  219 gcagttatggtattctgtttggggtcctcattaacttctctgacagaaaggtgtctgattttagtaagaaacaaaagcacttctggatgaatgcttgata 318  Q
    | ||||   || ||||| |||  ||||| |||| ||||||| |||||||||||||| ||||| | ||||||||| || ||||| || ||||| || ||||    
T  3009684 gaagttgcagtgttctggttgaagtccttattaccttctcttacagaaaggtgtctaattttcgaaagaaacaacagaacttccgggtgaatactagata 3009585  T
Q  319 gttgatgcttaacaggttggaccttctccggcttaagtggtaaaatgactattgtagttggaagggaa---ttacaagcaccatatatattctttatgtc 415  Q
    |||| || |||||||||| |||||| || |  || |  || || |  |   |||||||||||||||||   |||| ||| |||||||| |||| ||||||    
T  3009584 gttgttgtttaacaggtttgaccttgtctgatttcaaaggcaacacaatcgttgtagttggaagggaatctttaccagctccatatatcttctgtatgtc 3009485  T
Q  416 agcaagggttggcttctcctcaaccc 441  Q
    | ||||||||||||||||||||||||    
T  3009484 aacaagggttggcttctcctcaaccc 3009459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 2949524 - 2949949
Alignment:
Q  19 ccaatgtcacaacccactcctcgacatccttttttctttcgactaaattttccaacctgaccggaaacttttgcttccacatgtagtagctgcattcctt 118  Q
    ||||||||||||| ||||| || ||| || || | ||||| || |  || |||||| |||| ||||||||||||||||| |||||||||||||||||||     
T  2949524 ccaatgtcacaacacactcttccacacccattctcctttccacaacgttctccaacttgacaggaaacttttgcttccatatgtagtagctgcattcctg 2949623  T
Q  119 cccggcttcactattttcctcggcggagagatggagtgtgtaagactcagcattaatgtttttcctagtcacaaaattaatctcgcttgaaatagatacg 218  Q
      || | | | | |||||| | || || | ||||| ||||||||| |||||||  |||||| | || ||| |||| || ||||||||||||||||||||     
T  2949624 ttcgtcattattgttttcccccgcagataaatggattgtgtaagattcagcatccatgtttctacttgtctcaaagttgatctcgcttgaaatagataca 2949723  T
Q  219 gcagttatggtattctgtttggggtcctcattaacttctctgacagaaaggtgtctgattttagtaagaaacaaaagcacttctggatgaatgcttgata 318  Q
    |||||||  || |||| |||||| |||||| ||  |||||||||||||||| |||||||||| | ||| || |  |  ||||| || || |||||||| |    
T  2949724 gcagttaaagtgttctctttgggatcctcactattttctctgacagaaaggcgtctgatttttgaaaggaagagtaaaacttccgggtggatgcttgaga 2949823  T
Q  319 gttgatgcttaacaggttggaccttctccggcttaagtggtaaaatgactattgtagttggaagggaa---ttacaagcaccatatatattctttatgtc 415  Q
    |||| || || |||      ||| | |||||||| |||||||| |  | ||||||| |||||||||||   |||| |||||||||||| |||| ||||||    
T  2949824 gttgctggttcacaaaccttaccctgtccggcttcagtggtaagacaattattgtatttggaagggaatctttaccagcaccatatattttctgtatgtc 2949923  T
Q  416 agcaagggttggcttctcctcaaccc 441  Q
    | ||||||||||||||||||||||||    
T  2949924 aacaagggttggcttctcctcaaccc 2949949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 2932889 - 2933314
Alignment:
Q  19 ccaatgtcacaacccactcctcgacatccttttttctttcgactaaattttccaacctgaccggaaacttttgcttccacatgtagtagctgcattcctt 118  Q
    ||||||||||||| ||||| || ||||||||| | ||||| || | ||||| |||| |||| ||||||||||| ||||||||||| |||| ||||| |||    
T  2932889 ccaatgtcacaacacactcttccacatcctttctcctttccaccacattttgcaacttgacaggaaacttttgtttccacatgtaatagcagcatttctt 2932988  T
Q  119 cccggcttcactattttcctcggcggagagatggagtgtgtaagactcagcattaatgtttttcctagtcacaaaattaatctcgcttgaaatagatacg 218  Q
      || |   ||| |||||| | || || |||| || ||||||||| |||||||  ||||||||||| |||||||| |  ||||||||||||||||||||     
T  2932989 ttcgtcactactcttttcccctgcagatagattgattgtgtaagattcagcatccatgtttttccttgtcacaaagtcgatctcgcttgaaatagataca 2933088  T
Q  219 gcagttatggtattctgtttggggtcctcattaacttctctgacagaaaggtgtctgattttagtaagaaacaaaagcacttctggatgaatgcttgata 318  Q
    | |||||  || |||| |||||| ||||| ||  |||||||||||||||| |||||||||||   ||| ||||  |  ||||| || | || ||| || |    
T  2933089 gaagttacagtgttctttttgggatcctcgttgtcttctctgacagaaagatgtctgatttttaaaaggaacagtaaaacttccgggttaacgctcgaga 2933188  T
Q  319 gttgatgcttaacaggttggaccttctccggcttaagtggtaaaatgactattgtagttggaagggaa---ttacaagcaccatatatattctttatgtc 415  Q
    | || || || ||||||| |||||| ||  ||||||| || || |  | |||||| ||||||||||||   |||| |||||| ||||| | |||||||||    
T  2933189 gctgctgtttcacaggttcgaccttgtctagcttaagaggcaagacaattattgtcgttggaagggaatctttaccagcaccgtatatctgctttatgtc 2933288  T
Q  416 agcaagggttggcttctcctcaaccc 441  Q
    |  |||| ||||||||||||||||||    
T  2933289 aagaaggcttggcttctcctcaaccc 2933314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 23 - 441
Target Start/End: Original strand, 28027079 - 28027500
Alignment:
Q  23 tgtcacaacccactcctcgacatccttttttctttcgactaaattttccaacctgaccggaaacttttgcttccacatgtagtagctgcattccttcccg 122  Q
    |||||||||||| || || |||||  || |||||||||| | | ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |     
T  28027079 tgtcacaacccattcttccacatctgttcttctttcgaccacactttctgacctgaccggaaacttttgcttccacatgtagtagctgcattccttctca 28027178  T
Q  123 gcttcactattttcctcggcggagagatggagtgtgtaagactcagcattaatgtttttcctagtcacaaaattaatctcgcttgaaatagatacggcag 222  Q
       | |||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||| ||||    
T  28027179 ttattactattttcctctgcggagagatatagtgtgtaagactcagcattcatgtttttccttgtcacgaagttaatctcgcttgaaatagatacagcag 28027278  T
Q  223 ttatggtattctgtttggggtcctcattaacttctctgacagaaaggtgtctgattttagtaagaaacaaaagcacttctggatgaatgcttgatagttg 322  Q
    |||   |  |||||   || |  ||||| |||||||  |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| || ||    
T  28027279 ttaccatgctctgtccaggattttcatttacttctcgtacagaaaggtgtctgatttttgtaagaaacaaaagaacttctggatgaacgcttgaaagctg 28027378  T
Q  323 atgcttaacaggttggaccttctccggcttaagtggtaaaatgactattgtagttggaagggaattacaagcac---catatatattctttatgtcagca 419  Q
     || || || || | |||||| |||||||| || || || |  |   ||||||||||||| |  |||| |||||   | ||||| | |||||||||| ||    
T  28027379 ctgtttgaccgggttgaccttatccggctttaggggcaagacaatcgttgtagttggaagagctttaccagcaccgtcgtatatctgctttatgtcaaca 28027478  T
Q  420 agggttggcttctcctcaaccc 441  Q
    ||||||||||||||||||||||    
T  28027479 agggttggcttctcctcaaccc 28027500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 277
Target Start/End: Complemental strand, 4913949 - 4913737
Alignment:
Q  65 attttccaacctgaccggaaacttttgcttccacatgtagtagctgcattccttcccggcttcactattttcctcggcggagagatggagtgtgtaagac 164  Q
    |||||||||| |||| |||||||||||||| |||||||||||||||||| | ||  |  | | || ||||||| | || || | |||||  |||||||||    
T  4913949 attttccaacttgacaggaaacttttgctttcacatgtagtagctgcatactttttcatcattaccattttcccccgcagataaatggatagtgtaagac 4913850  T
Q  165 tcagcattaatgtttttcctagtcacaaaattaatctcgcttgaaatagatacggcagttatggtattctgtttggggtcctcattaacttctctgacag 264  Q
    |||||||| | ||||||  | | | || | ||||||||||||||||||||||| | |||||  |  | |  |||||||||||||||| ||||||||||||    
T  4913849 tcagcattcaagtttttttttgccgcagagttaatctcgcttgaaatagatacagtagttacagattccattttggggtcctcattatcttctctgacag 4913750  T
Q  265 aaaggtgtctgat 277  Q
    ||| || ||||||    
T  4913749 aaaagtctctgat 4913737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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