View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16560_low_11 (Length: 277)
Name: NF16560_low_11
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16560_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 45309214 - 45309465
Alignment:
| Q |
10 |
attatacttgatccaacatcttcagaattgttgttgtttgcctattttcatagaccaaactgatcagatttgtctagaatacctaactaaaatattataa |
109 |
Q |
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| T |
45309214 |
attatacttgatccaacatcttcagaattgttgttgtttgcctattttcatagaccaaactgatcagatttgtctagaatatctaactaaaatattataa |
45309313 |
T |
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| Q |
110 |
taacacagatttttcctacaagtaggtgtagaaagtataaaacacctcaatccagagtcgttcaactcaatactgttaaactaattcagca-----ttgt |
204 |
Q |
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| T |
45309314 |
taacacagatttttcctacaagtaggtgtagaaagtataaagcacctcaatccagagtcgttcaactcaatactgttaaactaattcagcattgttttgt |
45309413 |
T |
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| Q |
205 |
tatgttaccttgatgtacttagttgaccataagactcctttcatgatacttt |
256 |
Q |
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| T |
45309414 |
tatgttaccttgatgtacttagttgaccataagactcctttcatgatacttt |
45309465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 88043 - 88128
Alignment:
| Q |
174 |
actcaatactgttaaactaattcagcattgttatgttaccttgatgtacttagttgaccataagactcctttcatgatactttatt |
259 |
Q |
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| T |
88043 |
actcaatactgttaaacaaattcagcattgttatgttaccctgatgtacttagttgaccttaagattcctttcaggatactttatt |
88128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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