View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16560_low_13 (Length: 243)
Name: NF16560_low_13
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16560_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 39253803 - 39253591
Alignment:
| Q |
12 |
atgaatgactatatatacattgaaagatttgatgagactgtaaaatcatatgcatcagacaaaaataatgcaacgtttctggtttatttacagcttaact |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39253803 |
atgaatgactatatatacattgaaagatttgatgagactgtaaaatcatatgcatcagacaaaaataatgcaacgtttctggtttatttacagcttaact |
39253704 |
T |
|
| Q |
112 |
gactgacatagtgaaaaccagcctcaacttagtcttaattttaatcaatttttattagtttatcaaataacaatctacgcttaattcnnnnnnntagaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
39253703 |
gactgacatagtgaaaaccagcctcaacttagtcttaattttaatcaatttttattagtttgtcaaataacaatctacgcttaattcaaaaaaatagaaa |
39253604 |
T |
|
| Q |
212 |
ttaatgtgcagaa |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39253603 |
ttaatgtgcagaa |
39253591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 22757133 - 22757062
Alignment:
| Q |
29 |
cattgaaagatttgatgagactgtaaaatcatatgcatca-gacaaaaataatgcaacgtttctggtttatt |
99 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||||||||| |||| || |||||||| |||||||||||| |
|
|
| T |
22757133 |
cattaaaagatgtgatgagactggaaaatcatatgcatcatgacataagcaatgcaactgttctggtttatt |
22757062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University