View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16560_low_14 (Length: 241)
Name: NF16560_low_14
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16560_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 54161062 - 54161279
Alignment:
| Q |
15 |
agaaccgacttttgggcaaagctgaaaacatcaagaaccttcaaaaaggaaattaaattaatattgtatgaaataaattgagatatatttgaaaacaagg |
114 |
Q |
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| T |
54161062 |
agaaccgacttttgggcaaagctgaaaacatcaagaaccttcaaaaagaaaattaaattaatattgtatgaaataaattgagatatatttgaaaacaagg |
54161161 |
T |
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| Q |
115 |
aatcaaattgaaataatatgaatgaaagataccttcaaattcatagatgctgaacacccaatgctaatttcaatctctgggaactgttgcattactggtt |
214 |
Q |
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| T |
54161162 |
aatcaaattgaaataatatgaatgaaagataccttcaaattcatagatgctgaacacccaatgctaatttcaatctctgggaactgttgcattactggtt |
54161261 |
T |
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| Q |
215 |
gcattgcctctcctatgc |
232 |
Q |
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| T |
54161262 |
gcatcgcctcttctatgc |
54161279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 36873792 - 36873696
Alignment:
| Q |
112 |
aggaatcaaattgaaataatatgaatgaaagataccttcaaattcatagatgctgaacacccaatgctaatttcaatctctgggaactgttgcatta |
208 |
Q |
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| T |
36873792 |
aggaatctcattgcaatagtatgaatgaaagatacctggataagcctagatgccgaacactcgatgcaagtttcaatctcgcggaactgttgcatta |
36873696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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