View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16560_low_2 (Length: 584)

Name: NF16560_low_2
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16560_low_2
NF16560_low_2
[»] chr1 (5 HSPs)
chr1 (18-574)||(8103381-8103937)
chr1 (18-547)||(8101931-8102439)
chr1 (47-359)||(8099484-8099804)
chr1 (175-332)||(34970739-34970904)
chr1 (184-244)||(41419024-41419085)
[»] chr3 (6 HSPs)
chr3 (175-367)||(25045997-25046197)
chr3 (154-381)||(32278962-32279197)
chr3 (92-161)||(42957764-42957833)
chr3 (266-367)||(42028617-42028718)
chr3 (263-313)||(24373439-24373489)
chr3 (281-332)||(39439298-39439349)
[»] chr5 (3 HSPs)
chr5 (154-407)||(30085504-30085770)
chr5 (266-364)||(4944466-4944564)
chr5 (276-313)||(11617877-11617914)
[»] chr4 (8 HSPs)
chr4 (154-359)||(35033185-35033398)
chr4 (18-102)||(21261245-21261328)
chr4 (154-332)||(13779848-13780034)
chr4 (276-367)||(21261066-21261157)
chr4 (64-138)||(13779742-13779817)
chr4 (29-138)||(35033429-35033538)
chr4 (371-407)||(4291954-4291990)
chr4 (276-332)||(35292687-35292743)
[»] chr2 (3 HSPs)
chr2 (154-367)||(28198518-28198739)
chr2 (266-367)||(28219720-28219821)
chr2 (29-138)||(28198770-28198879)
[»] chr7 (2 HSPs)
chr7 (154-332)||(19626020-19626205)
chr7 (524-574)||(24916634-24916684)
[»] scaffold0022 (2 HSPs)
scaffold0022 (276-332)||(43502-43558)
scaffold0022 (276-332)||(77222-77278)
[»] chr8 (1 HSPs)
chr8 (265-337)||(38680508-38680580)


Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 574
Target Start/End: Complemental strand, 8103937 - 8103381
Alignment:
Q  18 atataatccttctatattattattgtttggtttaagctgcaaaagggaaaatacactagttgcaaattaggaagaaccaaaattttaaaaagttttgtgc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  8103937 atataatccttctatattattattgtttggtttaagctgcaaaagggaaaatacactagttgcaaattaccaagaatcaaaattttaaaaagttttgtgc 8103838  T
Q  118 ttaccttaatttgtggtgctattaatatttattctggtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacat 217  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||    
T  8103837 ttatcttaatttgtggtgctattaatatttattctggtgctacttatgaaaagtatcaaaataatcatatattgattgaattgagttatgaattcaagat 8103738  T
Q  218 agtgattcttttaaagtaaagggtaaaaatggaaaaacaattatactgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  8103737 agtgattcttttaaagtaaagggtaaaaatggaaaaacaattatactgttccatccattttttaaataatggagtgggaaattagttttattccgttgtt 8103638  T
Q  318 taatatccaaacaattaaatagaatctttgttccactccgtttcattccacatcattccgttccgttaattttatgttatccaaacagagtctgactnnn 417  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||| |||| || ||||       
T  8103637 taatatccaaacaatgaaatagaatctttgttccactccgtttcattccacttcgttctgtttcgttaattttatgttatccaagcagaatccgactaaa 8103538  T
Q  418 nnnncgtcgagatgttaattaatgatgtttctggatcattttgagcttcaattgtgacagttaaaggatgcataatagaggcaccattaacatcacggaa 517  Q
        |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  8103537 aaaacgtcaagatgttaattaatgatgtttatggatcattttgagcttcaactgtgacagttgaaggatgcataatagaggcaccattaacatcacggaa 8103438  T
Q  518 ttgatgctttgaaacatgagtaactcaacaacgactccttcatcattcatccctttg 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8103437 ttgatgctttgaaacatgagtaactcaacaacgactccttcatcattcatccctttg 8103381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 8102439 - 8101931
Alignment:
Q  18 atataatccttctatattattattgtttggtttaagctgcaaaagggaaaatacactagttgcaaattaggaagaaccaaaattttaaaaagttttgtgc 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  8102439 atataatccttctatattattatcgtttggtttaagctgcaaaagggaaaatacactagttgcaaattacgaagaatcaaaattttaaaaagttttgtgc 8102340  T
Q  118 ttaccttaatttgtggtgctattaatatttattctggtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacat 217  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||    
T  8102339 ttatcttaatttgtggtgctattaatatttattctggtgctacttatgaaaaatatcaaaataattatatattgattgaattgagttatgaattcaacat 8102240  T
Q  218 agtgattcttttaaagtaaagggtaaaaatggaa-aaacaattatactgttccatccattttctaaacaatggagtgggaaattagttttattccgttgt 316  Q
    |||||||||||||||||||||||||||||||||| | | ||  |||||||||  ||| ||||||||||||||||||||||||||||||||||||| | ||    
T  8102239 agtgattcttttaaagtaaagggtaaaaatggaagagaaaaaaatactgttctgtccgttttctaaacaatggagtgggaaattagttttattccatcgt 8102140  T
Q  317 ttaatatccaaacaattaaatagaatctttgttccactccgtttcattccacatcattccgttccgttaattttatgttatccaaacagagtctgactnn 416  Q
    ||||||| ||||||||  |||  ||||||||||||||||||||          || ||||| ||||||| |||||| |||||||||||||| || |||      
T  8102139 ttaatattcaaacaatggaatgaaatctttgttccactccgtt----------tcgttccgctccgttagttttatattatccaaacagagcctaactaa 8102050  T
Q  417 nnnnncgtcgagatgttaattaatgatgtttctggatcattttgagcttcaattgtgacagttaaaggatgcataatagaggcaccattaacatcacgga 516  Q
         | ||||| ||    |||||||||||||||||||| |||||||||        |||||| |||||||||||||||||||||||||||| |||||||    
T  8102049 aaaaacatcgagttg----ttaatgatgtttctggatcactttgagctt--------acagttgaaggatgcataatagaggcaccattaacttcacgga 8101962  T
Q  517 attgatgctttgaaacatgagtaactcaaca 547  Q
    | |||||||||||||||||||||||||||||    
T  8101961 agtgatgctttgaaacatgagtaactcaaca 8101931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 47 - 359
Target Start/End: Original strand, 8099484 - 8099804
Alignment:
Q  47 gtttaagctgcaaaagggaaaatacactagttgcaaattaggaagaaccaaaattttaaaaagttttgtgcttaccttaatttgtggtgctattaatatt 146  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  8099484 gtttaagctgcaaaagggaaaatacactagttgcaaattacgaagaaccaaaattttaaaaagttttgtgcttatcttaatttatggtgctattaatatt 8099583  T
Q  147 tattctggtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaa 246  Q
    |||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  8099584 tattttggtgctacttatgaaaaatatcaaaataatcacatattgattgaattgagtgttgaattcaatatagtgattcttttaaagtaaagggtaaaaa 8099683  T
Q  247 tg-gaaaaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaata 338  Q
    ||  |||||||||||||        |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||     
T  8099684 tgaaaaaaacaattataactcattttgttccgtctattttctaaacaatggagtgggaaattagtttcattccgttgtttaatatccaaacaatggaatg 8099783  T
Q  339 gaatctttgttccactccgtt 359  Q
     ||||||||||||||||||||    
T  8099784 aaatctttgttccactccgtt 8099804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 332
Target Start/End: Original strand, 34970739 - 34970904
Alignment:
Q  175 aaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatggaaaaacaa--ttata-------ctg 265  Q
    ||||||| || |||||||||||||||||||   ||||||||| | ||| | ||||||| |||||||||||||||||| || ||   ||||       | |    
T  34970739 aaaataactatatattgattgaattgagttgacaattcaacaaattga-tattttaaactaaagggtaaaaatggaataaaaagggtataacacttcccg 34970837  T
Q  266 ttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 332  Q
    |||| |||| |||| ||||||||||||||||||||||||  |||||||  |  ||||||||||||||    
T  34970838 ttccgtccactttccaaacaatggagtgggaaattagttccattccgtcataaaatatccaaacaat 34970904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 41419024 - 41419085
Alignment:
Q  184 acatattgattgaattgagttatgaattcaacatagtgatt-cttttaaagtaaagggtaaa 244  Q
    |||||||||||||||||||||  ||||||| |||| ||||| ||||| || |||||||||||    
T  41419024 acatattgattgaattgagttgagaattcagcatattgattcctttttaaataaagggtaaa 41419085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 175 - 367
Target Start/End: Original strand, 25045997 - 25046197
Alignment:
Q  175 aaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--aaaacaattata-------ctg 265  Q
    ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| ||||||||||||||||||||  |||| | |||||       | |    
T  25045997 aaaataactacgtattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaagggtaaaaatggaataaaaaagttataaatcattccg 25046095  T
Q  266 ttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatctttgttccactccgtttcattc 365  Q
    |||||| || ||||||||||||||||||| |||||||||  ||||||| ||  ||||||||||||||   || ||| ||||||||| ||||||| |||||    
T  25046096 ttccattcactttctaaacaatggagtggaaaattagttcaattccgtagtaaaatatccaaacaataggatggaacctttgttccgctccgttccattc 25046195  T
Q  366 ca 367  Q
    ||    
T  25046196 ca 25046197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 154 - 381
Target Start/End: Original strand, 32278962 - 32279197
Alignment:
Q  154 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatggaa-- 251  Q
    |||||| ||||||| | | | ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| |||||||||||||||||||||      
T  32278962 gtgctatttatgaataatgtcaaaataactacttattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaagggtaaaaatggaatg 32279060  T
Q  252 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatct 344  Q
    ||| | |||||       | ||||||| || |||| |||||||||||||| |||||||||  ||||||| ||  ||||||||||||||   || ||| ||    
T  32279061 aaaaagttataaatcattccgttccattcactttccaaacaatggagtggaaaattagttcaattccgtagtaaaatatccaaacaataggatggaacct 32279160  T
Q  345 ttgttccactccgtttcattccacatcattccgttcc 381  Q
    ||||||| ||||||| |||||||   |||||||||||    
T  32279161 ttgttccgctccgttccattccattccattccgttcc 32279197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 42957764 - 42957833
Alignment:
Q  92 aaccaaaattttaaaaagttttgtgcttaccttaatttgtggtgctattaatatttattctggtgctact 161  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||    
T  42957764 aaccaaaatttaaaaatgttttgttcttaccttaatttgtggtgctattaatgtttattatggtgctact 42957833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 266 - 367
Target Start/End: Complemental strand, 42028718 - 42028617
Alignment:
Q  266 ttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatctttgttccactccgtttcattc 365  Q
    |||| |||| |||| ||||||||||||||||||||||||  ||||||  || |||||||||||||||  |||  ||||||||||||||||| || |||||    
T  42028718 ttccgtccactttccaaacaatggagtgggaaattagttccattccgccgtataatatccaaacaatggaatgaaatctttgttccactccattccattc 42028619  T
Q  366 ca 367  Q
    ||    
T  42028618 ca 42028617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 24373489 - 24373439
Alignment:
Q  263 ctgttccatccattttctaaacaatggagtgggaaattagttttattccgt 313  Q
    |||||||||||| |||| |||||||||| |||||||||||||| |||||||    
T  24373489 ctgttccatccactttccaaacaatggaatgggaaattagtttcattccgt 24373439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 39439349 - 39439298
Alignment:
Q  281 aaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 332  Q
    ||||||||||||||||||||||||| |||||||  |  ||||||||||||||    
T  39439349 aaacaatggagtgggaaattagtttcattccgtcttgaaatatccaaacaat 39439298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 407
Target Start/End: Original strand, 30085504 - 30085770
Alignment:
Q  154 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--a 251  Q
    |||||| ||||||| | | | ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| |||||||||||||||||| |  |    
T  30085504 gtgctatttatgaataatgtcaaaataactacgtattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaagggtaaaaatgaaata 30085602  T
Q  252 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatct 344  Q
    ||| | |||||       | ||||||| || |||| |||||||||||||| |||||||||  ||||||| ||  ||||||||||||||   || ||| ||    
T  30085603 aaaaagttataaatcattccgttccattcactttccaaacaatggagtggaaaattagttcaattccgtagtaaaatatccaaacaataggatggaacct 30085702  T
Q  345 ttgttccactccgtttcattccacatcattccgt-----tccgttaattttatgttatccaaacagag 407  Q
    ||||||| ||||||| || ||| |  ||||||||     ||||||| ||| |||||||||||||||||    
T  30085703 ttgttccgctccgttccactccgctccattccgttccgctccgttagtttcatgttatccaaacagag 30085770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 266 - 364
Target Start/End: Original strand, 4944466 - 4944564
Alignment:
Q  266 ttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatctttgttccactccgtttcatt 364  Q
    |||| |||| |||| ||||||||||||  ||||||||||  ||| ||| || |||||||||||||||  ||| ||||||||||||||||||||| ||||    
T  4944466 ttccgtccactttccaaacaatggagtatgaaattagttccatttcgtcgtataatatccaaacaatggaatggaatctttgttccactccgttccatt 4944564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 11617877 - 11617914
Alignment:
Q  276 tttctaaacaatggagtgggaaattagttttattccgt 313  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  11617877 tttccaaacaatggagtgggaaattagtttcattccgt 11617914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 154 - 359
Target Start/End: Complemental strand, 35033398 - 35033185
Alignment:
Q  154 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--a 251  Q
    |||||| ||||||| | | | ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| ||||||| ||||||||||||  |    
T  35033398 gtgctatttatgaataatgtcaaaataactacgtattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaatggtaaaaatggaata 35033300  T
Q  252 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatct 344  Q
    ||| |||||||       | ||||||| || |||| |||||||||||||| |||||||||  ||||||| ||  ||||||||||||||   || ||| ||    
T  35033299 aaaaaattataaatcattccgttccattcactttccaaacaatggagtggaaaattagttccattccgtagtaaaatatccaaacaataggatggaacct 35033200  T
Q  345 ttgttccactccgtt 359  Q
    ||||||| |||||||    
T  35033199 ttgttccgctccgtt 35033185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 21261328 - 21261245
Alignment:
Q  18 atataatccttctatattattattgtttggtttaagctgcaaaagggaaaatacactagttgcaaattaggaagaaccaaaattt 102  Q
    ||||||| |||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| | |||||||||||||    
T  21261328 atataattcttcgatattattattgtttggtttaatctgccaaagg-aaaatacactagttgcaaattatgcagaaccaaaattt 21261245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 154 - 332
Target Start/End: Original strand, 13779848 - 13780034
Alignment:
Q  154 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--a 251  Q
    |||||| ||||||| | | | ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| ||||||| ||||||||||||  |    
T  13779848 gtgctatttatgaataatgtcaaaataactacgtattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaatggtaaaaatggaata 13779946  T
Q  252 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 332  Q
    ||| |||||||       | ||||||| || |||| |||||||||||||| |||||||||  ||||||| ||  ||||||||||||||    
T  13779947 aaaaaattataaatcattccgttccattcactttccaaacaatggagtggaaaattagttccattccgtagtaaaatatccaaacaat 13780034  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 367
Target Start/End: Complemental strand, 21261157 - 21261066
Alignment:
Q  276 tttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatctttgttccactccgtttcattcca 367  Q
    |||| |||||||||||| | |||||||| | |||||||  | ||||||| |||||||  ||| |||||||||||||||||| || |||||||    
T  21261157 tttccaaacaatggagtagaaaattagtctcattccgtcatataatatcaaaacaatggaatggaatctttgttccactccattccattcca 21261066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 13779742 - 13779817
Alignment:
Q  64 gaaaatacactagttgcaaattagga-agaaccaaaattttaaaaagttttgtgcttaccttaatttgtggtgcta 138  Q
    ||||||||  ||||||||||||| |  |||||| |||||| |||| ||||||| |||| |||||||||||||||||    
T  13779742 gaaaatactgtagttgcaaattatgccagaaccgaaatttaaaaatgttttgttcttatcttaatttgtggtgcta 13779817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 35033538 - 35033429
Alignment:
Q  29 ctatattattattgtttggtttaagctgcaaaagggaaaatacactagttgcaaattagga-agaaccaaaattttaaaaagttttgtgcttaccttaat 127  Q
    |||||||||||||||||  ||||| |||  |||  |||| |||  ||||||||||||| |  |||||| |||||| |||| ||||||| |||| ||||||    
T  35033538 ctatattattattgttttatttaacctgacaaatagaaa-tactgtagttgcaaattatgtcagaaccgaaatttaaaaatgttttgttcttatcttaat 35033440  T
Q  128 ttgtggtgcta 138  Q
    |||||||||||    
T  35033439 ttgtggtgcta 35033429  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 4291990 - 4291954
Alignment:
Q  371 cattccgttccgttaattttatgttatccaaacagag 407  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  4291990 cattccgctccgttaattttaggttatccaaacagag 4291954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 35292687 - 35292743
Alignment:
Q  276 tttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 332  Q
    |||| ||||||||||||||||||||||||  |||||||  |  ||||||||||||||    
T  35292687 tttccaaacaatggagtgggaaattagttccattccgtcttgaaatatccaaacaat 35292743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 367
Target Start/End: Complemental strand, 28198739 - 28198518
Alignment:
Q  154 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--a 251  Q
    |||||| ||||||| | | | ||||||| ||| ||||||||||||||||||  |||||||||||||||| | |||| ||||||||||||||||||||  |    
T  28198739 gtgctatttatgaataatgtcaaaataactacgtattgattgaattgagttgagaattcaacatagtga-tgtttttaagtaaagggtaaaaatggaata 28198641  T
Q  252 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatct 344  Q
    ||| | |||||       | ||||||| || |||| |||||||| ||||| |||||||||  ||||||| ||  ||||||||||||||    | ||| ||    
T  28198640 aaaaagttataaatcattccgttccattcactttccaaacaatgaagtggaaaattagttccattccgtagtaaaatatccaaacaatagggtggaacct 28198541  T
Q  345 ttgttccactccgtttcattcca 367  Q
    ||||||| ||||||| |||||||    
T  28198540 ttgttccgctccgttccattcca 28198518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 266 - 367
Target Start/End: Original strand, 28219720 - 28219821
Alignment:
Q  266 ttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaatagaatctttgttccactccgtttcattc 365  Q
    |||| |||| |||| ||||||||||||||||||||||||  ||||||  || |||||||||||||||  |||  ||||||||||||||||| || |||||    
T  28219720 ttccgtccactttccaaacaatggagtgggaaattagttccattccgccgtataatatccaaacaatggaatgaaatctttgttccactccattccattc 28219819  T
Q  366 ca 367  Q
    ||    
T  28219820 ca 28219821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 28198879 - 28198770
Alignment:
Q  29 ctatattattattgtttggtttaagctgcaaaagggaaaatacactagttgcaaattagga-agaaccaaaattttaaaaagttttgtgcttaccttaat 127  Q
    |||||||||||||||||  ||||| |||  ||| ||||| ||   ||||||||||||| |  |||||| |||||| |||| ||||||| |||| ||||||    
T  28198879 ctatattattattgttttatttaacctgacaaatggaaa-tattgtagttgcaaattatgccagaaccgaaatttaaaaatgttttgttcttatcttaat 28198781  T
Q  128 ttgtggtgcta 138  Q
    |||||||||||    
T  28198780 ttgtggtgcta 28198770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 332
Target Start/End: Original strand, 19626020 - 19626205
Alignment:
Q  154 gtgctacttatgaaaagtattaaaataattacatattgattgaattgagttatgaattcaacatagtgattcttttaaagtaaagggtaaaaatgga--a 251  Q
    |||||| ||||||| | | | ||||||| ||||||||||||||||||||||  |||||||||| ||||| | |||| ||||||||||||||||||||  |    
T  19626020 gtgctatttatgaataatgtcaaaataactacatattgattgaattgagttgagaattcaaca-agtga-tgtttttaagtaaagggtaaaaatggaata 19626117  T
Q  252 aaacaattata-------ctgttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 332  Q
    ||| |||||||       | ||||||| || |||| ||||||| |||||| |||||||||  ||||||| ||  ||||||||||||||    
T  19626118 aaaaaattataaatcattccgttccattcactttccaaacaattgagtggaaaattagttccattccgtagtaaaatatccaaacaat 19626205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 24916684 - 24916634
Alignment:
Q  524 ctttgaaacatgagtaactcaacaacgactccttcatcattcatccctttg 574  Q
    ||||||||| ||||||||||| ||||  |||||||||||||||||||||||    
T  24916684 ctttgaaacctgagtaactcagcaacatctccttcatcattcatccctttg 24916634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 43558 - 43502
Alignment:
Q  276 tttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 332  Q
    |||| |||||||||| || ||||||||||| ||||||| ||  ||||||||||||||    
T  43558 tttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaat 43502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 77278 - 77222
Alignment:
Q  276 tttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaat 332  Q
    |||| |||||||||| || ||||||||||| ||||||| ||  ||||||||||||||    
T  77278 tttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaat 77222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 38680508 - 38680580
Alignment:
Q  265 gttccatccattttctaaacaatggagtgggaaattagttttattccgttgtttaatatccaaacaattaaat 337  Q
    ||||| |||| |||| || |||||||||||||||||||||  ||||| | ||  |||||||||||||| ||||    
T  38680508 gttccgtccactttccaagcaatggagtgggaaattagttcaattccatcgtaaaatatccaaacaatgaaat 38680580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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