View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16560_low_4 (Length: 498)
Name: NF16560_low_4
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16560_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 237 - 465
Target Start/End: Original strand, 1416485 - 1416715
Alignment:
| Q |
237 |
tatatgttatatgtatatctctagtggatataattagtatagttttgacaatagagcacactatagggtcccctctttcctttcctttgtcctatgtg-- |
334 |
Q |
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| T |
1416485 |
tatatgttatatgtatatctctagtggatataattagtatagttttgacaatagagcacactatagggtcccctctttcctttcctttgtcctatgtgtg |
1416584 |
T |
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| Q |
335 |
tacataaatgttcccaaaacacccaacttctttcacttaatcctagcggtttaattaatgaaatttgtgtgcatgcatgatgtgcactaatcatcattta |
434 |
Q |
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| T |
1416585 |
tacataaatgttcccaaaacacccaacttctttcacttaatcctagcggtttaattaatgaaatttgtgtgcatgcatgatgtgcactaatcatcattta |
1416684 |
T |
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| Q |
435 |
ggaaaatatttcttatacactccaaatatgc |
465 |
Q |
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| T |
1416685 |
ggaaaatatttcttatacactccaaatatgc |
1416715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 1416214 - 1416438
Alignment:
| Q |
11 |
atgaaggtagaatgtcttttttgggaaaaataagggtgtcggtagtcaacaaaactaaataattattcctcacaact--nnnnnnnnnnnnnnnnnnnat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
1416214 |
atgaaggtagaatgtcttttttgggaaaaataagggtgtcggtagtcaacaaaactaaataaatattcctcacaactagagagagatagagagagagaat |
1416313 |
T |
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| Q |
109 |
ctcttcagctaaaactgaagaaaggaatgatcaagatgtttactttcnnnnnnnnnnnnnnnnnnnnnnatctcttcagctatagtgaagattgatggta |
208 |
Q |
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| T |
1416314 |
ctcttcagctaaaactgaagaaaggaatgatcaagatgtttactttc--gagagagagagagagagagaatctcttcagctatagtgaagattgatggta |
1416411 |
T |
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| Q |
209 |
cagactgagcattgggcttattttcag |
235 |
Q |
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| T |
1416412 |
cagactgagcattgggcttattttcag |
1416438 |
T |
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