View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16560_low_5 (Length: 495)
Name: NF16560_low_5
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16560_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 166 - 483
Target Start/End: Original strand, 14440680 - 14440993
Alignment:
| Q |
166 |
ctagtggaaatcttagaaaccctaacattggatcggatactgatctctaataccagcagaacaccgacacatatgatacattcaattaattcatttatca |
265 |
Q |
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| T |
14440680 |
ctagtggaagtcttagaaaccctaacattggatcggagactgatctctgataccagcagaacaccgacacatatgatacattcaattaattcatttatca |
14440779 |
T |
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| Q |
266 |
tattgctaattaggtgatgttgtgtctatgtcaaatactatatatgatttttgtatatgtgtccgtgcttcgtagatggaaatacattaccaggatattg |
365 |
Q |
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| T |
14440780 |
tattgctaattaggtgatgttgtgtctatgtcaaatactat----gatttttgtatatgtgtccgtgcttcgtagatggaaatacattaccaggatattg |
14440875 |
T |
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| Q |
366 |
atcagaaaactccttgttgaagtgacaataggaagttggatacttgggcaaggtaaaaaccttgctttgctcaatagctcccttaaatttctcccacctt |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14440876 |
atcagaaaactccttgttgaagtgacaataggaagttggatacttgggcaaggtaaaaaccttgcttttctcaatagctcccttaaatttctcccacctt |
14440975 |
T |
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| Q |
466 |
tctatcatgagttttttg |
483 |
Q |
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|||||||||||||||||| |
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| T |
14440976 |
tctatcatgagttttttg |
14440993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 14440524 - 14440629
Alignment:
| Q |
11 |
catcatcaccaaatcgttcccctcctcttgtacgaatcttcagtttttccaaataactctcaccattttctatgccttccacgcacttcaaccaagcaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14440524 |
catcatcaccaaatcgttcccctcctcttgtacgaatcttcagtttttccaaataactctcaccattttctatgccttccacgcacttcaaccaagcaaa |
14440623 |
T |
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| Q |
111 |
agctgt |
116 |
Q |
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| T |
14440624 |
agctgt |
14440629 |
T |
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