View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16560_low_6 (Length: 460)

Name: NF16560_low_6
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16560_low_6
NF16560_low_6
[»] chr7 (3 HSPs)
chr7 (1-346)||(3614926-3615271)
chr7 (1-346)||(5568513-5568847)
chr7 (49-346)||(35611325-35611619)
[»] scaffold1903 (1 HSPs)
scaffold1903 (1-346)||(387-731)
[»] chr4 (4 HSPs)
chr4 (1-346)||(9981293-9981627)
chr4 (61-229)||(46355873-46356035)
chr4 (59-224)||(20855476-20855635)
chr4 (1-46)||(20855635-20855680)
[»] chr3 (2 HSPs)
chr3 (58-309)||(33130188-33130445)
chr3 (49-236)||(54670797-54670973)
[»] chr2 (1 HSPs)
chr2 (58-315)||(15480331-15480594)
[»] chr8 (1 HSPs)
chr8 (49-224)||(14735280-14735449)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 3615271 - 3614926
Alignment:
Q  1 cacagcaatacaaacaaaattttcagaagcattcaactcaattccttctcaaatcctttgtgtttcttcctctgatctcctcttgaaacaaataggccta 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3615271 cacaacaatacaaacaaaattttcagaagcattcaactcaattccttctcaaatcctttgtgtttcttcctctgatctcctcttgaaacaaataggccta 3615172  T
Q  101 cccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatgaacatttttatctggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3615171 cccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatgaacatttttatctggtt 3615072  T
Q  201 tttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaagagttaccaatgagggactcatttgatgaatttgttgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||    
T  3615071 tttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaggagttaccagtgagtgactcatttgatgaatttgttgg 3614972  T
Q  301 agatggcataatagtttgataaatctgcttatgcatacatggatac 346  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||||    
T  3614971 agatggcatagtagtttgataaatctgcttgtgcatccatggatac 3614926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 5568513 - 5568847
Alignment:
Q  1 cacagcaatacaaacaaaattttcagaagcattcaactcaattccttctcaaatcctttgtgtttcttcctctgatctcctcttgaaacaaataggccta 100  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||           |||||||||||||||| ||||||||||||||||||||||||||    
T  5568513 cacaacaatacaaacaaaattttcagaagcattcaattcaattcct-----------ttgtgtttcttcctctaatctcctcttgaaacaaataggccta 5568601  T
Q  101 cccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatgaacatttttatctggtt 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5568602 cccatgaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatgaacatttttatctagtt 5568701  T
Q  201 tttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaagagttaccaatgagggactcatttgatgaatttgttgg 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||| ||| |||||||||| ||||||||    
T  5568702 tttcataaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaagagttattagtgagtgacccatttgatgagtttgttgg 5568801  T
Q  301 agatggcataatagtttgataaatctgcttatgcatacatggatac 346  Q
    |||||||||| ||| ||||||||||||||| ||||| |||||||||    
T  5568802 agatggcatagtagcttgataaatctgcttgtgcatccatggatac 5568847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 49 - 346
Target Start/End: Original strand, 35611325 - 35611619
Alignment:
Q  49 tcaaatcctttgtgtttcttcctctgatctcctcttgaaacaaataggcctacccataaaatcaattgtttaaccttcttcttcaccatcaccatcaaca 148  Q
    |||| |||||||||||||||||||| |||||||| ||||||||||| |  ||||||| ||||||||||||||||||||   |||||||||||||||||||    
T  35611325 tcaattcctttgtgtttcttcctctaatctcctcatgaaacaaataagtttacccatgaaatcaattgtttaaccttc---ttcaccatcaccatcaaca 35611421  T
Q  149 acttcatcttgttcttgttttatgagattaacatgaacatttttatctggtttttcatgaagtaaatgccatgaaagagaagggtttgattttgaattca 248  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35611422 acttcatcctgttcttgttttatgagattaacatgaacatttttatctggtttttcatgaagtaaatgccatgaaagagaagagtttgattttgaattca 35611521  T
Q  249 aatggaatgaaaaagagttaccaatgagggactcatttgatgaatttgttggagatggcataatagtttgataaatctgcttatgcatacatggatac 346  Q
    |||||||||||||||||||| || |||  ||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||    
T  35611522 aatggaatgaaaaagagttatcagtgaatgacccatttgatgaatttgttggagatggcatagtagcttgataaatctgcttgtgcatccatggatac 35611619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 387 - 731
Alignment:
Q  1 cacagcaatacaaacaaaattttcagaagcattcaactcaattccttctcaaatcctttgtgtttcttcctctgatctcctcttgaaacaaataggccta 100  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||    
T  387 cacaacaatacaaacaaaattttcagaagcattcaattcaattccttctcaattcctttgtgtttcttcctctaatctcctcttgaaacaaatatgccta 486  T
Q  101 cccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatgaacatttttatctggtt 200  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  487 cccatgaaatcaattgtttaatcttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatgaacatttttat-tggtt 585  T
Q  201 tttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaagagttaccaatgagggactcatttgatgaatttgttgg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||||||||    
T  586 tttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaagagttatcagtgagtgacccatttgatgaatttgttgg 685  T
Q  301 agatggcataatagtttgataaatctgcttatgcatacatggatac 346  Q
    || ||||||| ||| ||||||||||||||| ||||| |||||||||    
T  686 aggtggcatagtagcttgataaatctgcttgtgcatccatggatac 731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 9981293 - 9981627
Alignment:
Q  1 cacagcaatacaaacaaaattttcagaagcattcaactcaattccttctcaaatcctttgtgtttcttcctctgatctcctcttgaaacaaataggccta 100  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||           |||||||||||||||| ||||||||||||||||||||||||||    
T  9981293 cacaacaatacaaacaaaattttcagaagcattcaattcaattcct-----------ttgtgtttcttcctctaatctcctcttgaaacaaataggccta 9981381  T
Q  101 cccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatgaacatttttatctggtt 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||    
T  9981382 cccatgaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcctgttcttattttatgagattaacatgaacatttttatgtgatt 9981481  T
Q  201 tttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaagagttaccaatgagggactcatttgatgaatttgttgg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||| ||| ||||||||||||||||||     
T  9981482 tttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaagagttatcggtgagtgacccatttgatgaatttgttga 9981581  T
Q  301 agatggcataatagtttgataaatctgcttatgcatacatggatac 346  Q
    |||||||||| ||| ||||||||| ||||| ||||| |||| ||||    
T  9981582 agatggcatagtagcttgataaatgtgcttgtgcatccatgaatac 9981627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 61 - 229
Target Start/End: Complemental strand, 46356035 - 46355873
Alignment:
Q  61 tgtttcttcctctgatctcctcttgaaacaaataggcctacccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaac-ttcatcttg 159  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||      ||||||||| || |||||     
T  46356035 tgtttcttcctctaatctcctcgtgaaacaaaaaggcctacccataaaatcaattgtttaaccatcttcttcacc------atcaacaactttaatctta 46355942  T
Q  160 ttcttgttttatgagattaacatgaacatttttatctggtttttcatgaagtaaatgccatgaaagagaa 229  Q
    ||||||||||| |||||||||||||  ||||||||||| ||||| |||||| ||| ||||| ||||||||    
T  46355941 ttcttgttttacgagattaacatgattatttttatctgatttttaatgaag-aaacgccataaaagagaa 46355873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 20855635 - 20855476
Alignment:
Q  59 tgtgtttcttcctctgatctcctcttgaaacaaataggcctacccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaac-ttcatct 157  Q
    ||||||||||||||| |||||||| ||||||||| |||||||| ||| ||||||||||||||||| |||||||||||      ||||||||| || ||||    
T  20855635 tgtgtttcttcctctaatctcctcgtgaaacaaaaaggcctacacatgaaatcaattgtttaaccatcttcttcacc------atcaacaactttaatct 20855542  T
Q  158 tgttcttgttttatgagattaacatgaacatttttatctggtttttcatgaagtaaatgccatgaaa 224  Q
    | || ||||||||||||||||||||||  ||||||||||| ||||| |||||| ||| |||||||||    
T  20855541 tatttttgttttatgagattaacatgattatttttatctgatttttaatgaag-aaacgccatgaaa 20855476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20855680 - 20855635
Alignment:
Q  1 cacagcaatacaaacaaaattttcagaagcattcaactcaattcct 46  Q
    |||||| ||||||||||||||||||||| || |||| |||||||||    
T  20855680 cacagccatacaaacaaaattttcagaaacaatcaattcaattcct 20855635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 58 - 309
Target Start/End: Complemental strand, 33130445 - 33130188
Alignment:
Q  58 ttgtgtttcttcctctgatctcctcttgaaacaaataggcctacccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatct 157  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  33130445 ttgtgtttcttcctctaatctcctcttgaaacaaataggtctacccataaaatcaattgtttcaccttcttcttcaccaacaccatcaacaacttcatct 33130346  T
Q  158 tgttc------ttgttttatgagattaacatgaacatttttatctggtttttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaat 251  Q
    |||||      |||||| |||||||||| ||||||||| || ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||    
T  33130345 tgttcctgttcttgtttgatgagattaagatgaacattgttgtctggtttttcatgaagtaaacgccaggaaagagaagggtttggttttgaattcaaat 33130246  T
Q  252 ggaatgaaaaagagttaccaatgagggactcatttgatgaatttgttggagatggcat 309  Q
    ||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||    
T  33130245 ggaatgaaaaagagttatcagtgagtgacccatttgatgaatttgttggagatggcat 33130188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 54670797 - 54670973
Alignment:
Q  49 tcaaatcctttgtgtttcttcctctgatctcctcttgaaacaaataggcctacccataaaatcaattgtttaaccttcttcttcaccatcaccatcaaca 148  Q
    |||| |||||||||||||||||||| |||||||| ||||||||| || ||||||||| |||||||||||||||| ||||         |||| ||||||     
T  54670797 tcaattcctttgtgtttcttcctctaatctcctcgtgaaacaaaaagccctacccatgaaatcaattgtttaactttct---------tcacaatcaac- 54670886  T
Q  149 acttcatcttgttcttgttttatgagattaacatgaacatttttatctggtttttcatgaagtaaatgccatgaaagagaagggtttg 236  Q
      || | ||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||  ||||||||||||||| ||||    
T  54670887 -tttaaacttattcttgttttatgagattaacatgactatttttatctggtttttaatgaagtaaacaccatgaaagagaaggatttg 54670973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 58 - 315
Target Start/End: Original strand, 15480331 - 15480594
Alignment:
Q  58 ttgtgtttcttcctctgatctcctcttgaaacaaataggcctacccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatct 157  Q
    |||||||||||||||  |||||||||||||||||||||| |||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  15480331 ttgtgtttcttcctccaatctcctcttgaaacaaataggtctacccaagaaatcaattgtttcaccttcctcttcaccatcaccatcaacaacttcatct 15480430  T
Q  158 tgttcttgtttta------tgagattaacatgaacatttttatctggtttttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaat 251  Q
    |||||||||||||      | | ||||||||||||||| || |||||||||||||||||||||  |||| ||| ||||||||||| ||||||||||||||    
T  15480431 tgttcttgttttaagatattaacattaacatgaacattgttgtctggtttttcatgaagtaaacaccattaaatagaagggtttggttttgaattcaaat 15480530  T
Q  252 ggaatgaaaaagagttaccaatgagggactcatttgatgaatttgttggagatggcataatagt 315  Q
    ||||||||||||||||| ||  |||  || ||||||||||||||||| |||| | |||||||||    
T  15480531 ggaatgaaaaagagttatcagcgagtcacccatttgatgaatttgtttgagacgacataatagt 15480594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 14735449 - 14735280
Alignment:
Q  49 tcaaatcctttgtgtttcttcctctgatctcctcttgaaacaaataggcctacccataaaatcaattgtttaaccttcttcttcaccatcaccatcaaca 148  Q
    |||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||||      ||| ||||||||    
T  14735449 tcaattcctttgtgtttcttcctctaatctcctcgtgaaacaaaaaggcctacccatgaaatcaattgtttaaccatcttct------tcatcatcaaca 14735356  T
Q  149 ac-ttcatcttgttcttgttttatgagattaacatgaacatttttatctggtttttcatgaagtaaatgccatgaaa 224  Q
    || || ||||| |||| ||||||||||||||||||||| ||||||||||| ||||| |||||| ||| |||||||||    
T  14735355 actttaatcttattctggttttatgagattaacatgaatatttttatctgatttttaatgaag-aaacgccatgaaa 14735280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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