View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16560_low_8 (Length: 395)
Name: NF16560_low_8
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16560_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 379
Target Start/End: Original strand, 8953573 - 8953942
Alignment:
| Q |
10 |
aagaatatcttagccaatatctaatatcagaagccaaagagaggccggtcaaagatccttgtgtcgtggattctgtatcataagaaaatattctattaat |
109 |
Q |
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| T |
8953573 |
aagaatatcttagccaatatctaatatcagaagccaaagagaggccggtcaaagatccttgtgtcgtggattctgtatcataagaaaatattctattaat |
8953672 |
T |
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| Q |
110 |
aatggcggtaagttttttcacagatacacacacacatcttataacaggaaatcgaacatgaagtttggttttagtgcatgtttgtaatgacggcgagttt |
209 |
Q |
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| T |
8953673 |
aatggcggtaagtttttacacagatacacacacacatcttataacaggaaatcgaacatgaagtttggttttagtgcatgtttgtaatgacggcgagttt |
8953772 |
T |
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| Q |
210 |
gactaattttgttgaagttctaaggtgtagcttttatcagaatagctcaatacaccgtggttttgccaaactcattgttaatccaaacatatacttaatc |
309 |
Q |
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| T |
8953773 |
gactaattttgttgaagttctaaggtgtagctttgatcagagtagctcaatacaccgtggttttgccaaactcattgttaatccaaacatatacttaatc |
8953872 |
T |
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| Q |
310 |
aaataaccgttcccttcttttgatggtggctacaatcatctcctatttacttcatgttggatgtatcttc |
379 |
Q |
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| T |
8953873 |
aaataaccgttcccttcttttgatggtggctacaatcatctcctatttacttcatgttggatgtatcttc |
8953942 |
T |
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