View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_100 (Length: 284)
Name: NF16561_high_100
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_100 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 31856255 - 31856506
Alignment:
| Q |
17 |
attcatcacataatttgtcacaaaaggaaaaatatatgaatattatgtacccttgcattgtgcatgcaatccattcaggttgcatgattgtggaaggaag |
116 |
Q |
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| T |
31856255 |
attcatcacataatttgtcacaaaaggaaaaatatatgaat--tatgtacccttgcattgtgcatgcaatccattcaggttgcatgattgtggaaggaag |
31856352 |
T |
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| Q |
117 |
aaggaaagaactcgattaataggtggtagttgaaatggaacattagcagtaattaacaagcaagcacaatccatactagtactcatcatagactgtaatg |
216 |
Q |
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| T |
31856353 |
aaggaaagaactcgattaataggcggtagttgaaatggaacattagcagtaattaacaagcaagcacaatccatactagtactcatcatagactgtaatg |
31856452 |
T |
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| Q |
217 |
aatcacaacaactacttgatggtgttattaaaccattataattggtgcttcctg |
270 |
Q |
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| T |
31856453 |
aatcacaacaactacttgatggtgttattaaaccattataattggtgcttcctg |
31856506 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 38117940 - 38117877
Alignment:
| Q |
176 |
gcaagcacaatccatactagtactcatcatagactgtaatgaatcacaacaactacttgatggt |
239 |
Q |
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| T |
38117940 |
gcaagcacaatccatatttgtgctcatcaaagaccttaatgaatcacaacaagtagttgatggt |
38117877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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