View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_high_11 (Length: 610)

Name: NF16561_high_11
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_high_11
NF16561_high_11
[»] chr6 (5 HSPs)
chr6 (320-595)||(2481464-2481740)
chr6 (118-213)||(2481237-2481332)
chr6 (118-213)||(5365349-5365444)
chr6 (118-154)||(605273-605309)
chr6 (118-154)||(12307100-12307136)
[»] chr4 (5 HSPs)
chr4 (320-595)||(12632377-12632653)
chr4 (320-595)||(27108084-27108360)
chr4 (118-213)||(12632785-12632880)
chr4 (118-213)||(27108492-27108587)
chr4 (118-154)||(23643709-23643745)
[»] chr1 (5 HSPs)
chr1 (320-595)||(44680697-44680973)
chr1 (320-595)||(23271939-23272215)
chr1 (118-213)||(23272347-23272441)
chr1 (118-213)||(44681105-44681200)
chr1 (118-154)||(40889073-40889109)
[»] chr8 (5 HSPs)
chr8 (118-307)||(18616319-18616514)
chr8 (321-376)||(18616199-18616254)
chr8 (118-154)||(186975-187011)
chr8 (118-154)||(308602-308638)
chr8 (118-154)||(25276923-25276959)
[»] chr3 (4 HSPs)
chr3 (322-459)||(4709008-4709145)
chr3 (317-418)||(4708773-4708873)
chr3 (121-207)||(4708519-4708605)
chr3 (118-154)||(785551-785587)
[»] chr5 (2 HSPs)
chr5 (355-417)||(39789350-39789412)
chr5 (118-157)||(14394272-14394311)
[»] chr2 (4 HSPs)
chr2 (332-397)||(13510120-13510187)
chr2 (118-154)||(9074897-9074933)
chr2 (118-154)||(9914505-9914541)
chr2 (118-154)||(30674220-30674256)
[»] chr7 (3 HSPs)
chr7 (118-154)||(15578051-15578087)
chr7 (118-154)||(28750708-28750744)
chr7 (118-154)||(38916174-38916210)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 320 - 595
Target Start/End: Original strand, 2481464 - 2481740
Alignment:
Q  320 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 419  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  2481464 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 2481563  T
Q  420 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtga-nnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 518  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  2481564 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 2481663  T
Q  519 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgat 595  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | |||||||    
T  2481664 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgat 2481740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 2481237 - 2481332
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 213  Q
    |||||||||||||| ||||||||||||  | |||||| || | |||| ||||| ||||||||||||||||||||||||  || |||||||||||||    
T  2481237 ttgtagatgataaataacataatggatagtattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt 2481332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 5365444 - 5365349
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 213  Q
    |||||||||||||| |||||||||||| || |||||| || | |||| ||||| ||||||||||||||||||||||||  || || ||||||||||    
T  5365444 ttgtagatgataaataacataatggataatattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaaaagaagatatt 5365349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 605273 - 605309
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  605273 ttgtagatgataaataacataattgatgatgttagtg 605309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 12307136 - 12307100
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  12307136 ttgtagatgataaataacataattgatgatgttagtg 12307100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 320 - 595
Target Start/End: Complemental strand, 12632653 - 12632377
Alignment:
Q  320 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 419  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  12632653 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 12632554  T
Q  420 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtga-nnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 518  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  12632553 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 12632454  T
Q  519 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgat 595  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | |||||||    
T  12632453 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgat 12632377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 320 - 595
Target Start/End: Complemental strand, 27108360 - 27108084
Alignment:
Q  320 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 419  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  27108360 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 27108261  T
Q  420 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtga-nnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 518  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  27108260 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 27108161  T
Q  519 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgat 595  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | |||||||    
T  27108160 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgat 27108084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 12632880 - 12632785
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 213  Q
    |||||||||||||| |||||||||||| || |||||| || | |||| ||||| ||||||||||||||||||||||||  || |||||||||||||    
T  12632880 ttgtagatgataaataacataatggataatattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt 12632785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 27108587 - 27108492
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 213  Q
    |||||||||||||| ||||||||||||  | |||||| || | |||| ||||| ||||||||||||||||||||||||  || |||||||||||||    
T  27108587 ttgtagatgataaataacataatggatagtattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt 27108492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 23643709 - 23643745
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  23643709 ttgtagatgataaataacataattgatgatgttagtg 23643745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 320 - 595
Target Start/End: Complemental strand, 44680973 - 44680697
Alignment:
Q  320 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 419  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  44680973 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 44680874  T
Q  420 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtga-nnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 518  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  44680873 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 44680774  T
Q  519 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgat 595  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | |||||||    
T  44680773 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgat 44680697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 320 - 595
Target Start/End: Complemental strand, 23272215 - 23271939
Alignment:
Q  320 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 419  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  23272215 tgagacaaattgtgttccatttgtttgtcaaatttttcttagtgaagaagaagcttatgtcttttataagagatatgcttatcaacaagggttctcaatt 23272116  T
Q  420 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtga-nnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 518  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||| | | |||||||||||||    
T  23272115 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgacaataatggaaccatcaa 23272016  T
Q  519 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgat 595  Q
    ||||||||||||||||| ||| |||||||||| | |||||||||||||||| ||| ||||||||||| | |||||||    
T  23272015 aagagcagagaaatagacaattgtcaaagtgtaaatgcaaagctcatttacgaatcaaattacaaaaatctcatgat 23271939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 23272441 - 23272347
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 213  Q
    |||||||||||||| ||||||||| || || |||||| || | |||||||||| ||||||||||||||||||||||||  || |||||||||||||    
T  23272441 ttgtagatgataaataacataatg-ataatattagtgctacaaagaccaacaataaaataagttttgatttgaatgaatatccaatagaagatatt 23272347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 44681200 - 44681105
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 213  Q
    |||||||||||||| ||||||||||||  | |||||| || | |||| ||||| ||||||||||||||||||||||||  || |||||||||||||    
T  44681200 ttgtagatgataaataacataatggatagtattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt 44681105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 40889073 - 40889109
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  40889073 ttgtagatgataaataacataattgatgatgttagtg 40889109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 118 - 307
Target Start/End: Complemental strand, 18616514 - 18616319
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatattaatt 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||    |||    
T  18616514 ttgtagatgataaagaacataatggattatgttagtgttatagagatcaacaataaaataagttttgatttgaatgaaagtctaa-agaagat----att 18616420  T
Q  218 gctttagaaaa--tttgttcagaaataatga---------ctgagcatgatttagtgaaggacttgttagtggttgataacataggaagttctgagaaag 306  Q
    |||||||||||   || || | ||| ||| |          | |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  18616419 gctttagaaaagggttatttacaaacaattattcagcatttttagcatgatttagtgaaggacttgttagtagttgataacatagaaagttctgagaaag 18616320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 18616254 - 18616199
Alignment:
Q  321 gagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatt 376  Q
    |||||||||||||||   |||| ||||||||||||||||| |||| ||||||||||    
T  18616254 gagacaaattgtgttttttttgctggtcaaatttttcttaatgaaaaagaagcatt 18616199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 186975 - 187011
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  186975 ttgtagatgataaataacataattgatgatgttagtg 187011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 308602 - 308638
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  308602 ttgtagatgataaataacataattgatgatgttagtg 308638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 25276959 - 25276923
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  25276959 ttgtagatgataaataacataattgatgatgttagtg 25276923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 322 - 459
Target Start/End: Complemental strand, 4709145 - 4709008
Alignment:
Q  322 agacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatnnn 421  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||  || |||||       
T  4709145 agacaaattttgtttcctttgttggtcaaatttttcttagtgaagaagaaggatatgtcttttataagagatatgcttatcagcaagaattgtcaataaa 4709046  T
Q  422 nnnnggtagattcacaaacaagaatggggttatgagca 459  Q
        |||||||||  ||| |||||||||||||| ||||    
T  4709045 aaaaggtagattcgtaaaaaagaatggggttattagca 4709008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 317 - 418
Target Start/End: Original strand, 4708773 - 4708873
Alignment:
Q  317 taatgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctca 416  Q
    |||||||||||||| ||||| ||||||||||| ||||||| |||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  4708773 taatgagacaaattatgttctctttgttggtcgaattttttttagtgaaaaagaagcatgtct-ttttataagagatatgcttatcaacaagggttctca 4708871  T
Q  417 at 418  Q
    ||    
T  4708872 at 4708873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 4708519 - 4708605
Alignment:
Q  121 tagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaa 207  Q
    ||||||||||| ||| |||||| ||||| || || || | |||||| ||| |||||||||||||||||||||||| ||| |||||||    
T  4708519 tagatgataaataacttaatggttgatgctaatgctacatagaccatcaataaaataagttttgatttgaatgaatgtccaatagaa 4708605  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 785587 - 785551
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  785587 ttgtagatgataaataacataattgatgatgttagtg 785551  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 39789412 - 39789350
Alignment:
Q  355 ttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaa 417  Q
    |||||||||||||||||| |||| |||||||||||| |||||| |||||||| ||||||||||    
T  39789412 ttcttagtgaagaagaagaatttatcttttataagatatatgcatatcaacacgggttctcaa 39789350  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 14394272 - 14394311
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtgtta 157  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  14394272 ttgtagatgataaataacataattgatgatgttagtgtta 14394311  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 13510120 - 13510187
Alignment:
Q  332 tgttccctttgttggtcaaat--ttttcttagtgaagaagaagcatttgtcttttataagagatatgc 397  Q
    |||||| ||||||||||||||  |||||||||  | |||||| |||||||||| ||||||||||||||    
T  13510120 tgttccttttgttggtcaaatatttttcttagcaaggaagaaacatttgtcttctataagagatatgc 13510187  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 9074897 - 9074933
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  9074897 ttgtagatgataaataacataattgatgatgttagtg 9074933  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 9914505 - 9914541
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  9914505 ttgtagatgataaataacataattgatgatgttagtg 9914541  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 30674256 - 30674220
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  30674256 ttgtagatgataaataacataattgatgatgttagtg 30674220  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 15578051 - 15578087
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  15578051 ttgtagatgataaataacataattgatgatgttagtg 15578087  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 28750744 - 28750708
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  28750744 ttgtagatgataaataacataattgatgatgttagtg 28750708  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 38916210 - 38916174
Alignment:
Q  118 ttgtagatgataaagaacataatggatgatgttagtg 154  Q
    |||||||||||||| |||||||| |||||||||||||    
T  38916210 ttgtagatgataaataacataattgatgatgttagtg 38916174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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