View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_112 (Length: 258)
Name: NF16561_high_112
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_112 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 43360686 - 43360461
Alignment:
| Q |
13 |
cacagagcagaagtcaccgtaacctctttaattgtgcttcagcaggtaattctctcgtgttctgaaattttatcttgttaatttcagtagttattaggca |
112 |
Q |
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| T |
43360686 |
cacagagcagaagtcaccgtaacctctttaattgtgcttcagcaggtaattctctcgtgttctgaaattttatcttgttactttcagtagttattaggca |
43360587 |
T |
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| Q |
113 |
gtacacaatcattccccttgagaaataaactactaatttacctcctaatactaatttacaccgattactttgagaaatcaactactaatataatctctgt |
212 |
Q |
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| T |
43360586 |
gtacacaatcattccccttgagaaataaactactaatttacctcctaatactaatttacaccgattactttgagaaatcaactactaatataatctctgt |
43360487 |
T |
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| Q |
213 |
ccatgcttttgcgtcaaagaggtcat |
238 |
Q |
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| T |
43360486 |
ccatgcttttgcgtcaaagaggtcat |
43360461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 17637603 - 17637675
Alignment:
| Q |
167 |
tttacaccgattactttgagaaatcaactactaatataatctctgtccatgcttttgcgtcaaagaggtcatg |
239 |
Q |
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| T |
17637603 |
tttacacctgttcctttgagaaatcaactactgatttaatctttgtccatacttttgggtcaaagaggtcatg |
17637675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 43362768 - 43362739
Alignment:
| Q |
210 |
tgtccatgcttttgcgtcaaagaggtcatg |
239 |
Q |
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| T |
43362768 |
tgtccatgcttttgcgtcaaagaggtcatg |
43362739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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