View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_high_113 (Length: 258)

Name: NF16561_high_113
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_high_113
NF16561_high_113
[»] chr8 (3 HSPs)
chr8 (14-251)||(27867658-27867896)
chr8 (14-70)||(27913767-27913823)
chr8 (14-70)||(27960186-27960242)
[»] chr3 (3 HSPs)
chr3 (126-202)||(44765340-44765416)
chr3 (126-202)||(47510717-47510793)
chr3 (154-202)||(4195397-4195445)
[»] chr4 (2 HSPs)
chr4 (155-202)||(48582183-48582230)
chr4 (165-202)||(41163049-41163086)
[»] chr7 (1 HSPs)
chr7 (165-218)||(31245280-31245333)
[»] chr6 (1 HSPs)
chr6 (145-194)||(18592771-18592820)
[»] chr5 (1 HSPs)
chr5 (154-202)||(42641113-42641161)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 27867658 - 27867896
Alignment:
Q  14 cttaacacactaacttttgaatccactcaagaaaaaactctaacctgtaaatttatcgaaaaaacatatatata--cggttaattcgcctcacaaaatta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||    
T  27867658 cttaacacactaacttttgaatccactcaagaaaaaactctaacctgtaaatttatcgaaaaaatatatatatatacggttaattcgcctcacaaaatta 27867757  T
Q  112 acaannnnnnnnacggagaatgttaacgagtatctttggagtattgattaaaatactaaaataagttagtttacatcaaaaaatggtgtaactactgctt 211  Q
    ||||        ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27867758 acaattttttt-acggaaaatattaacgagtatctttgaagtattgattaaaatactaaaataagttagtttacatcaaaaaatggtgtaactattgctt 27867856  T
Q  212 agacaaacttatttcccctaccatctttgacattcttatc 251  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  27867857 agacaaacttatttcccctactatctttgacattcttatc 27867896  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 27913767 - 27913823
Alignment:
Q  14 cttaacacactaacttttgaatccactcaagaaaaaactctaacctgtaaatttatc 70  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  27913767 cttaacacactaacttttaaatccactccagaaaaaactctaacctgtaaatttatc 27913823  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 27960186 - 27960242
Alignment:
Q  14 cttaacacactaacttttgaatccactcaagaaaaaactctaacctgtaaatttatc 70  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  27960186 cttaacacactaacttttaaatccactccagaaaaaactctaacctgtaaatttatc 27960242  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 44765416 - 44765340
Alignment:
Q  126 ggagaatgttaacgagtatctttggagtattgattaaaatactaaaataagttagtttacatcaaaaaatggtgtaa 202  Q
    ||||||||||||| | ||| ||||| |||||||||||| || |||||||||| ||||| |||  |||| ||||||||    
T  44765416 ggagaatgttaaccattatttttggggtattgattaaagtattaaaataagtaagtttgcattgaaaagtggtgtaa 44765340  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 47510717 - 47510793
Alignment:
Q  126 ggagaatgttaacgagtatctttggagtattgattaaaatactaaaataagttagtttacatcaaaaaatggtgtaa 202  Q
    |||||||| |||| | || |||||| | |||||||||| ||||||||||||| |||||  ||| |||||||||||||    
T  47510717 ggagaatgctaaccattacctttggggcattgattaaagtactaaaataagtaagtttgtatcgaaaaatggtgtaa 47510793  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 4195445 - 4195397
Alignment:
Q  154 attgattaaaatactaaaataagttagtttacatcaaaaaatggtgtaa 202  Q
    |||| ||||| ||||||||||||| ||||| ||| ||||||||||||||    
T  4195445 attggttaaagtactaaaataagtaagtttgcataaaaaaatggtgtaa 4195397  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 48582183 - 48582230
Alignment:
Q  155 ttgattaaaatactaaaataagttagtttacatcaaaaaatggtgtaa 202  Q
    ||||||||| ||||||||||||| ||||| |||| |||||||||||||    
T  48582183 ttgattaaagtactaaaataagtaagtttgcatcgaaaaatggtgtaa 48582230  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 41163049 - 41163086
Alignment:
Q  165 tactaaaataagttagtttacatcaaaaaatggtgtaa 202  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  41163049 tactaaaataagttagtttacatcgaaaagtggtgtaa 41163086  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 31245333 - 31245280
Alignment:
Q  165 tactaaaataagttagtttacatcaaaaaatggtgtaactactgcttagacaaa 218  Q
    ||||||||||||| ||||| |||| ||||||||||||| || |||| |||||||    
T  31245333 tactaaaataagtaagtttgcatcgaaaaatggtgtaattattgctaagacaaa 31245280  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 18592820 - 18592771
Alignment:
Q  145 ctttggagtattgattaaaatactaaaataagttagtttacatcaaaaaa 194  Q
    ||||||||||||||||||| | ||||||||||| ||||| ||| ||||||    
T  18592820 ctttggagtattgattaaagttctaaaataagtaagtttgcataaaaaaa 18592771  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 42641113 - 42641161
Alignment:
Q  154 attgattaaaatactaaaataagttagtttacatcaaaaaatggtgtaa 202  Q
    |||| ||||| ||||||||||||| ||||| |||| |||||||||||||    
T  42641113 attggttaaagtactaaaataagtaagtttgcatcgaaaaatggtgtaa 42641161  T

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