View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_115 (Length: 256)
Name: NF16561_high_115
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_115 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 52823068 - 52823294
Alignment:
| Q |
14 |
attattcttaatcaaattttgtgaatgaaataataattattgttttcttcggcattcaactctagtaatgtcttactagtctttagacgaggacaatttt |
113 |
Q |
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| T |
52823068 |
attattcttaatcaaattttgtgaatgaaataataattattgttttcttcggcattcaactctagtaatgtcttactagtctctagacgaggacaatttt |
52823167 |
T |
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| Q |
114 |
gcagaaaagaaaattatataaaacatttcttaatgtttctcggtttgtgtttggacacaaatcaatttgctgtctacttgtcttgttttaggatgggtta |
213 |
Q |
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| T |
52823168 |
gcagaaaagaaaattatataaaacatttcttaatgtttctcggtttgtgtttggacacaaatcaatttgctatctacttgtcttgttttaggatgggtta |
52823267 |
T |
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| Q |
214 |
tttcgccaactaattaaggatgaaatg |
240 |
Q |
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| T |
52823268 |
tttcgccaactaattaaggatgaaatg |
52823294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 6014842 - 6014742
Alignment:
| Q |
139 |
tttcttaatgtttctcggtttgtgtttggacacaaatcaatttgctgtctacttgtcttgttttaggatgggttatttcgccaactaattaaggatgaaa |
238 |
Q |
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| T |
6014842 |
tttcttaatgtctatcggtttgtgttttggcacaaatcaatttgctatctacttgtctcattttaggattggttattttgcaaactaattaaggaagaaa |
6014743 |
T |
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| Q |
239 |
t |
239 |
Q |
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| T |
6014742 |
t |
6014742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 30255803 - 30255729
Alignment:
| Q |
159 |
tgtgtttggacacaaatcaatttgctgtctacttgtcttgttttaggatgggttatttcgccaactaattaagga |
233 |
Q |
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| T |
30255803 |
tgtgtttggccacaaatcaatttgctatctacttgtctcattttaggatggattattttgccaactaattaagga |
30255729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 30255849 - 30255810
Alignment:
| Q |
35 |
tgaatgaaataataattattgttttcttcggcattcaact |
74 |
Q |
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|||| |||||||||||||||||||||||||||||| |||| |
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| T |
30255849 |
tgaacgaaataataattattgttttcttcggcattgaact |
30255810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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