View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_121 (Length: 251)
Name: NF16561_high_121
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_121 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 40802681 - 40802440
Alignment:
| Q |
10 |
cgaagaaaatgaaagtaaagcctcagtcgagttagagcaagtattgaggtcttctgacaatgaccaccatgaacattatcccgctccttcaaccccacaa |
109 |
Q |
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| T |
40802681 |
cgaacaaaatgaaagtaaagcctcagtcgagttagagcaagtattgaggtcttctgacaatgaccaccatgaacattatcccgctccttcaaccccacaa |
40802582 |
T |
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| Q |
110 |
ttgaaacaggtgggaagattacttgatgatggggattgccaagagcagactaattgctccacggaaaaggaaagtggggaacatgatggagaatctaaat |
209 |
Q |
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| T |
40802581 |
ttgaaacaggtgggaagattacttgatgatggggattgccaagagcagactaattgctccacggaaaaagaaagtggggaacatgatggagaatctaaat |
40802482 |
T |
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| Q |
210 |
ctgtcgaaattacatgtgaaaatttgaatgctgaaagtatta |
251 |
Q |
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| T |
40802481 |
ctgtcgaaattacatgtgaaaatttgaatgctgaaagtatta |
40802440 |
T |
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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 4643069 - 4643233
Alignment:
| Q |
86 |
tatcccgctccttcaaccccacaattgaaacaggtgggaagattacttgatgatggggattgccaagagcagactaattgctccacggaaaaggaaagtg |
185 |
Q |
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||||| |||||||| ||||| ||||| ||||| | || ||| ||| | |||||||| |||||||| |||||||||||||||| | ||||| ||||||| |
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| T |
4643069 |
tatccggctccttccaccccgcaattaaaacaaggggcaaggttagtggatgatggtgattgccacgagcagactaattgcttaatagaaaaagaaagtg |
4643168 |
T |
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| Q |
186 |
gggaacatga---tggagaatctaaatctgtcgaaattacatgtgaaaatttgaatgctgaaagt |
247 |
Q |
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| T |
4643169 |
gggaacatgacagtggtgaatgtaaatttgtcgacacttcatgtgagaatttgaatgctgaaagt |
4643233 |
T |
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