View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_126 (Length: 250)
Name: NF16561_high_126
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_126 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 39605483 - 39605248
Alignment:
| Q |
1 |
cggacctacaaaattgagataaccctgtttgagaatcttctcattctttctaacaataacagacattttgcatggatcaataaagagagggagattcttg |
100 |
Q |
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| T |
39605483 |
cggaccaacaaaattgagataaccctgtttgagaatcttctcattctttctaacaataacagacattttgcatggatcaataaagagagggagattcttg |
39605384 |
T |
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| Q |
101 |
ctaattcatttgcacattgaacattaggaggatggtcctgatttcacagtccacgtattaatttacaaccaacatgcaggtgcatgaagatgggatattt |
200 |
Q |
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| T |
39605383 |
ctaattcatttgcacattgaacattaggaggatggtcctgatttcacagtccacgtattaatttacaaccaacatgcaggtgcatgaagatgggatattt |
39605284 |
T |
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| Q |
201 |
cataaaatagaattagaatagagataaaataacctt |
236 |
Q |
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| T |
39605283 |
cataaaatagaaatagaataaagataaaataacctt |
39605248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 39502903 - 39503015
Alignment:
| Q |
105 |
ttcatttgcacattgaacattaggaggatggtcctgatttcacagtccacgtattaatttacaaccaacatgcaggtgcatgaagatgggat-atttcat |
203 |
Q |
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| T |
39502903 |
ttcatttgcacgttgagcatctggaggatggtcctgatttcacatttaacacattaatttataaccaacatgcaggtgcatgaacatggaataaatttat |
39503002 |
T |
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| Q |
204 |
aaaatagaattag |
216 |
Q |
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||||||||||||| |
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| T |
39503003 |
aaaatagaattag |
39503015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 39101217 - 39101177
Alignment:
| Q |
2 |
ggacctacaaaattgagataaccctgtttgagaatcttctc |
42 |
Q |
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| T |
39101217 |
ggaccaacaaagttgagataaccctgtttgagaatcttctc |
39101177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 2363796 - 2363748
Alignment:
| Q |
172 |
acatgcaggtgcatgaagatgggatatttcataaaatagaattagaata |
220 |
Q |
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| T |
2363796 |
acatccaggtgcatgaagatggaatgtttcataaaatataatttgaata |
2363748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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