View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_high_127 (Length: 248)

Name: NF16561_high_127
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_high_127
NF16561_high_127
[»] chr1 (1 HSPs)
chr1 (1-230)||(5131238-5131466)
[»] chr7 (2 HSPs)
chr7 (133-206)||(35780308-35780381)
chr7 (133-230)||(48361390-48361487)
[»] chr5 (14 HSPs)
chr5 (133-227)||(8535975-8536069)
chr5 (134-223)||(8637351-8637440)
chr5 (137-178)||(1599842-1599883)
chr5 (133-177)||(2904541-2904585)
chr5 (133-175)||(2844598-2844640)
chr5 (133-175)||(2856425-2856467)
chr5 (133-230)||(8529408-8529505)
chr5 (134-206)||(9074277-9074349)
chr5 (134-185)||(9003977-9004028)
chr5 (133-175)||(2874035-2874077)
chr5 (137-175)||(8644744-8644782)
chr5 (139-177)||(11354043-11354081)
chr5 (139-177)||(11373312-11373350)
chr5 (141-177)||(8678348-8678384)
[»] chr4 (1 HSPs)
chr4 (133-177)||(9443622-9443666)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 5131466 - 5131238
Alignment:
Q  1 gtaatggtgggtaaagaaagggtttatattgcttgcaatccagatcatgatagttttcaagttgtgaattcgtgcaagctactacaactcctctcaggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5131466 gtaatggtgggtaaagaaagggtttatattgcttgcaatccagatcatgatagttttcaagttgtgaattcgtgcaagttactacaactcctctcaggtt 5131367  T
Q  101 gaaaacaggtcgtgtaactatggtaggattttctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaa 200  Q
    ||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5131366 gaacacaggtcgtgtaattatggtaggattttctagttttggtttccaat-taaaactaatgaatataaggtgataaaaatatgggtaaggcatgttaaa 5131268  T
Q  201 cgtgccgttcgttgggagtttgagcgtgtg 230  Q
    ||||||||||||||||||||||||||||||    
T  5131267 cgtgccgttcgttgggagtttgagcgtgtg 5131238  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 35780381 - 35780308
Alignment:
Q  133 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgcc 206  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||    
T  35780381 ctggttttggtttccaacctaaaactaatgaatataaggtgataaaaatatggataagacatgttcaacgtgcc 35780308  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 48361390 - 48361487
Alignment:
Q  133 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtg 230  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |  ||||| || |||||||||||||||  |   ||||||||||||||||||    
T  48361390 ctggttttggtttccaacctaaaactaatgaatataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgcgtgggagtttgagcgtgtg 48361487  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 8536069 - 8535975
Alignment:
Q  133 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgt 227  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |  ||||| || |||||||||||||||  |   |||||||||||||||    
T  8536069 ctggttttggtttccaacctaaaactaatgaatataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgtgtgggagtttgagcgt 8535975  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 8637440 - 8637351
Alignment:
Q  134 tggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttga 223  Q
    |||||||||||||||| ||||||||||||||||||||||||||| || |||||  ||  |||||||||| | |  |||||||| ||||||    
T  8637440 tggttttggtttccaacctaaaactaatgaatataaggtgataagaatatggggcagtgatgttaaacgaggcaatcgttgggtgtttga 8637351  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 1599842 - 1599883
Alignment:
Q  137 ttttggtttccaatctaaaactaatgaatataaggtgataaa 178  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  1599842 ttttggtttccaacctaaaactaatgaatataaggtgataaa 1599883  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 2904541 - 2904585
Alignment:
Q  133 ctggttttggtttccaatctaaaactaatgaatataaggtgataa 177  Q
    ||||||||||||||||| | |||||||||||||||||||||||||    
T  2904541 ctggttttggtttccaacccaaaactaatgaatataaggtgataa 2904585  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 2844598 - 2844640
Alignment:
Q  133 ctggttttggtttccaatctaaaactaatgaatataaggtgat 175  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  2844598 ctggttttggtttccaacccaaaactaatgaatataaggtgat 2844640  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 2856425 - 2856467
Alignment:
Q  133 ctggttttggtttccaatctaaaactaatgaatataaggtgat 175  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  2856425 ctggttttggtttccaacccaaaactaatgaatataaggtgat 2856467  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 8529505 - 8529408
Alignment:
Q  133 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtg 230  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||     ||| |||| |||||||||| ||||  ||  |||| |||||||||||||    
T  8529505 ctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtg 8529408  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 9074277 - 9074349
Alignment:
Q  134 tggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgcc 206  Q
    ||||||||| |||||| |||| ||||||||||||||||| |||| ||  ||| |||| |||| ||||||||||    
T  9074277 tggttttggattccaacctaatactaatgaatataaggtaataagaatgtggataagacatggtaaacgtgcc 9074349  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 9004028 - 9003977
Alignment:
Q  134 tggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgg 185  Q
    |||||||||||  ||| ||||||||||||| |||||||||||||||| ||||    
T  9004028 tggttttggttatcaacctaaaactaatgattataaggtgataaaaatatgg 9003977  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 2874035 - 2874077
Alignment:
Q  133 ctggttttggtttccaatctaaaactaatgaatataaggtgat 175  Q
    |||||||| |||||||| | |||||||||||||||||||||||    
T  2874035 ctggttttagtttccaacccaaaactaatgaatataaggtgat 2874077  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 8644782 - 8644744
Alignment:
Q  137 ttttggtttccaatctaaaactaatgaatataaggtgat 175  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  8644782 ttttggcttccaacctaaaactaatgaatataaggtgat 8644744  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 11354043 - 11354081
Alignment:
Q  139 ttggtttccaatctaaaactaatgaatataaggtgataa 177  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  11354043 ttggcttccaacctaaaactaatgaatataaggtgataa 11354081  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 11373350 - 11373312
Alignment:
Q  139 ttggtttccaatctaaaactaatgaatataaggtgataa 177  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  11373350 ttggcttccaacctaaaactaatgaatataaggtgataa 11373312  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 8678384 - 8678348
Alignment:
Q  141 ggtttccaatctaaaactaatgaatataaggtgataa 177  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  8678384 ggtttccaacctaaaactaatgaatacaaggtgataa 8678348  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 9443666 - 9443622
Alignment:
Q  133 ctggttttggtttccaatctaaaactaatgaatataaggtgataa 177  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||    
T  9443666 ctggttttggattccaacctaaaactaatgaatataaggtaataa 9443622  T

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