View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_128 (Length: 248)
Name: NF16561_high_128
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_128 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 2667014 - 2667227
Alignment:
| Q |
17 |
caaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667014 |
caaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactc |
2667113 |
T |
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| Q |
117 |
agctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667114 |
agctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaa |
2667213 |
T |
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| Q |
217 |
gacaaggaccattt |
230 |
Q |
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|||||||||||||| |
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| T |
2667214 |
gacaaggaccattt |
2667227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 2676032 - 2676245
Alignment:
| Q |
17 |
caaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676032 |
caaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactc |
2676131 |
T |
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| Q |
117 |
agctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676132 |
agctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaa |
2676231 |
T |
|
| Q |
217 |
gacaaggaccattt |
230 |
Q |
| |
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|||||||||||||| |
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| T |
2676232 |
gacaaggaccattt |
2676245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 2682060 - 2682271
Alignment:
| Q |
17 |
caaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactc |
116 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||| || || | || || |||||| | || ||||||||||||||||||||||| |||||||| |
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| T |
2682060 |
caaaggaaaaagcccaagacacaactggtcaagctagagaaaaaggatcggagattggccagtcaaccaaagaaactgcccaatcaggaaaagacaactc |
2682159 |
T |
|
| Q |
117 |
agctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaa |
216 |
Q |
| |
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||| ||||| || || |||||||| || ||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||| |||| |||||| |
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| T |
2682160 |
agcagggttcttacagcagacaggagaaaaggttaagggtatggcccaaagtgctactgaagcagttaagaacacttttggaatggcacatgacgaggaa |
2682259 |
T |
|
| Q |
217 |
gacaaggaccat |
228 |
Q |
| |
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|| ||||||||| |
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|
| T |
2682260 |
gataaggaccat |
2682271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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