View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_14 (Length: 562)
Name: NF16561_high_14
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 184 - 550
Target Start/End: Complemental strand, 55689863 - 55689510
Alignment:
| Q |
184 |
ataaaaaacgtttgcaaacagcaaaataaactcaatgtgtcgaaatttcaccgaggcagagtactatgatttcaccctttccatggaccccaaggacttc |
283 |
Q |
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| T |
55689863 |
ataagaaacgtttgcaaagagcaaaataaactcaatgtgttgaaatttcaccgaggcagagtactatgatttcaccctttccatggaccctaaggacttc |
55689764 |
T |
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| Q |
284 |
cctgttaatcataaaaagtcataaaaagcaggtatcaatcaagtaatacacaatacaaagcaatgaaccatcgttttcaacttctaatccatctcaaaca |
383 |
Q |
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| T |
55689763 |
cctgttaatcataaaaag----------caggtaccaatcaagtaacacacaatacaaagcaatgaaccatcgtt--caacttctaatccatctcaaaca |
55689676 |
T |
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| Q |
384 |
gaaaaacatcagcaggtacagccactgctgattagtgattacagactcatttatatcacaagttcat-acccctcactcattcctnnnnnnnggcaaatt |
482 |
Q |
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| T |
55689675 |
gaaaaacatcggcaggtacagccactgctgattagtgattacagactcatttatatcacaagttcataacccctcagtcattcctaaaaaaaggcaaatt |
55689576 |
T |
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| Q |
483 |
ttcaacaggctatcaatatcttacaaatatgtgacagccactgctgatcacagactcattcatgtcac |
550 |
Q |
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| T |
55689575 |
ttcaacaggctatcaatatcttacaaatatgtgacagccactgctgat--cagactcattcatgtcac |
55689510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 55690068 - 55689930
Alignment:
| Q |
1 |
ctcagaaagtttggcctaagtggaagcaagatacattcccttatccatgtctcctttt-nnnnnnntaaaagtttttgtttgtattaaatacaatctttt |
99 |
Q |
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| T |
55690068 |
ctcagaaagtttagcctaagtggaagcaagatacattcacttatccatgtctccttttaaaaaaaataaaagtttttgtttgtattaaatacaatctttt |
55689969 |
T |
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| Q |
100 |
gaggat------atccacatgttacatgtataccactcc |
132 |
Q |
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| T |
55689968 |
gaggataaattaatccacatgttacatgtatatcactcc |
55689930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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