View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_145 (Length: 228)
Name: NF16561_high_145
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_145 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 41095334 - 41095125
Alignment:
| Q |
1 |
atgaccatagtcagtcattctgctattacaaattcatccactgaacacaaaatacacatcttactnnnnnnnctaatccagagatctactgtgtgctaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41095334 |
atgaccatagtcagtcattctgctattacaaattcatctactgaacacaaaatacacatcttactaaaaaaactaatccagagatctactgtgtgctaca |
41095235 |
T |
|
| Q |
101 |
tttattagaaatcctacatagagatatcttgtcatatggaatgcaatgcttgtaactctcaaatagacaccataaaatatctgtgtaggtacgtatcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
41095234 |
tttattagaaatcctacatagagatatcttgtcatatggaatgcaatgcttgtaactctcaaataaacaccataaaatatctgtgtaggtacgtatcaac |
41095135 |
T |
|
| Q |
201 |
atgcatcatg |
210 |
Q |
| |
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|||||||||| |
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|
| T |
41095134 |
atgcatcatg |
41095125 |
T |
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