View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_high_18 (Length: 536)

Name: NF16561_high_18
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_high_18
NF16561_high_18
[»] chr5 (4 HSPs)
chr5 (110-390)||(10520559-10520836)
chr5 (44-392)||(35802910-35803253)
chr5 (110-362)||(35854083-35854332)
chr5 (357-392)||(35851949-35851984)
[»] chr4 (8 HSPs)
chr4 (350-392)||(45862515-45862557)
chr4 (315-392)||(47292731-47292808)
chr4 (267-392)||(56209299-56209425)
chr4 (296-348)||(45862385-45862437)
chr4 (3-33)||(45879164-45879194)
chr4 (266-332)||(45881915-45881981)
chr4 (350-392)||(45882075-45882117)
chr4 (175-249)||(54303766-54303840)
[»] chr8 (1 HSPs)
chr8 (311-387)||(7962514-7962590)
[»] chr2 (2 HSPs)
chr2 (248-344)||(24351088-24351184)
chr2 (358-398)||(24350959-24350999)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 110 - 390
Target Start/End: Complemental strand, 10520836 - 10520559
Alignment:
Q  110 cggatgatggctatttgttctttagcctcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaaatcatagggagtgatt 209  Q
    ||||||||||||||||||||||| ||||||   |||||||||||    ||||||||||||||||||||||||| |   ||||||||||||||||||||||    
T  10520836 cggatgatggctatttgttctttcgcctct---gatattccaaca---gtccattttctaactttagagtatttttcaaaagaaatcatagggagtgatt 10520743  T
Q  210 tcacccc---aagtctctccttcaagagagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgata 306  Q
    |||||||   |||||||| |||||| ||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10520742 tcacccccccaagtctcttcttcaacagattgataacctcatgatcatcatgcactaaacttgatatgaaaccctcattttttagtttatctacttgata 10520643  T
Q  307 aacaccttcatttacgaagttttcaacttcttctcttctcttccctctagaagaagagactttatccagccaatttgaatagat 390  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||| |||| ||||||||||||||| ||||    
T  10520642 gacaccttcatttatgaagttttcaacttcttctcttctcttccctctaagataagagtctttctccagccaatttgaacagat 10520559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 44 - 392
Target Start/End: Original strand, 35802910 - 35803253
Alignment:
Q  44 tctttgaccatatcaatcttcttaatgatattacttgtgacgc---cacaacgcatggcctctgaggaccggatgatggctatttgttctttagcctctt 140  Q
    |||||||||||| ||||||||| ||||| |||||||||||||    ||| |  ||| | | ||||||  ||||||||||||||||||||||||||||||     
T  35802910 tctttgaccataccaatcttctcaatgaaattacttgtgacgatgtcactatccatagtccctgaggctcggatgatggctatttgttctttagcctct- 35803008  T
Q  141 ctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaaatcatagg---gagtgatttcaccccaagtctctccttcaagagagt 237  Q
      |||||||| ||    ||||||||||| ||||||||||||| ||| ||||||||||||||   ||||||||||||||||||||||  ||||||||||||    
T  35803009 --gatattcccaca---gtccattttctgactttagagtattttctaaaagaaatcataggagggagtgatttcaccccaagtctc--cttcaagagagt 35803101  T
Q  238 gataacgtcatcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttct 337  Q
    |||||| ||||||||||    |||||| ||||||||||||||||| | ||| |||||||||| | |||||||||||||||||| |||||||| |||||||    
T  35803102 gataacatcatcatcata---cactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaacttct 35803198  T
Q  338 tctcttctcttccctctagaagaagagactttatccagccaatttgaatagatat 392  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35803199 tctcttttcttccctctagaagaagagactttatccagccaatttgaatagatat 35803253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 110 - 362
Target Start/End: Complemental strand, 35854332 - 35854083
Alignment:
Q  110 cggatgatggctatttgttctttagcctcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaaatcatagggagtgatt 209  Q
    ||||||||||| ||||||||||||||||||   |||||| | ||    |||||||||||  |||||||||||| ||| ||||||||||||||||||||||    
T  35854332 cggatgatggcaatttgttctttagcctct---gatattgccaca---gtccattttctgcctttagagtattttctaaaagaaatcatagggagtgatt 35854239  T
Q  210 tcaccccaagtctctccttcaagagagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgat---- 305  Q
    | |||||||| ||||||||||||||||| ||||| ||||||||   || |||||| ||||||||||||||||| | ||| |||||||||| | |||        
T  35854238 taaccccaagcctctccttcaagagagttataacctcatcatc---atacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaac 35854142  T
Q  306 --aaacaccttcatttacgaagttttcaacttcttctcttctcttccctctagaagaag 362  Q
      ||||||||||||||| ||||| || ||||||||||||| |||||||| |||||||||    
T  35854141 agaaacaccttcatttatgaagtcttgaacttcttctcttttcttccctatagaagaag 35854083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 392
Target Start/End: Complemental strand, 35851984 - 35851949
Alignment:
Q  357 aagaagagactttatccagccaatttgaatagatat 392  Q
    |||||||||||||| |||||||||||||||||||||    
T  35851984 aagaagagactttaaccagccaatttgaatagatat 35851949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 45862515 - 45862557
Alignment:
Q  350 cctctagaagaagagactttatccagccaatttgaatagatat 392  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45862515 cctctagaagaagagactttatccagccaatttgaatagatat 45862557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 392
Target Start/End: Complemental strand, 47292808 - 47292731
Alignment:
Q  315 catttacgaagttttcaacttcttctcttctcttccctctagaagaagagactttatccagccaatttgaatagatat 392  Q
    |||||| |||||||||||  |||||||||||||| | | |||||||||| || |||||||||||||||||||| ||||    
T  47292808 catttatgaagttttcaatatcttctcttctctttcttgtagaagaagataccttatccagccaatttgaataaatat 47292731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 392
Target Start/End: Original strand, 56209299 - 56209425
Alignment:
Q  267 ttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttctt-ctcttctcttccctctagaagaagaga 365  Q
    |||||||||||||||| | ||  ||| ||| | ||||||| ||||| ||||||| ||| || ||||  |||| || || |||| ||||| | ||||||||    
T  56209299 ttgatatgaaaccctcttcttccagtctatttgcttgatagacaccatcatttatgaaattgtcaatatctttctattttctttcctcttgcagaagaga 56209398  T
Q  366 ctttatccagccaatttgaatagatat 392  Q
    ||||||| |||||||||||||||||||    
T  56209399 ctttatcgagccaatttgaatagatat 56209425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 45862385 - 45862437
Alignment:
Q  296 tctacttgataaacaccttcatttacgaagttttcaacttcttctcttctctt 348  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||||||||| ||||    
T  45862385 tctacttgatagacaccttcatttatgaagttctcaacatcttctcttttctt 45862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 45879164 - 45879194
Alignment:
Q  3 gactgtcaattcggataatagcagccttgaa 33  Q
    |||||||||||||||||||||||||||||||    
T  45879164 gactgtcaattcggataatagcagccttgaa 45879194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 332
Target Start/End: Original strand, 45881915 - 45881981
Alignment:
Q  266 cttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaa 332  Q
    |||| |||||||||||| | ||| ||| | ||||||||||| ||||||||||||| |||||| ||||    
T  45881915 cttgttatgaaaccctcttctttcagtctgtctacttgatagacaccttcatttatgaagttctcaa 45881981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 45882075 - 45882117
Alignment:
Q  350 cctctagaagaagagactttatccagccaatttgaatagatat 392  Q
    |||||||  ||||| ||||||||||||||||||||||||||||    
T  45882075 cctctagcggaagatactttatccagccaatttgaatagatat 45882117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 54303840 - 54303766
Alignment:
Q  175 agagtattctctgaaagaaatcatagggagtgatttcaccccaagtctctccttcaagagagtgataacgtcatc 249  Q
    |||||||||| |||||||||  | ||| ||||||||||||||||| || |||||||||   |||||||| |||||    
T  54303840 agagtattctttgaaagaaacaaaaggcagtgatttcaccccaagcctttccttcaagttggtgataacatcatc 54303766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 7962514 - 7962590
Alignment:
Q  311 ccttcatttacgaagttttcaacttcttctcttctcttccctctagaagaagagactttatccagccaatttgaata 387  Q
    |||||||||| ||| |||||||  |||||| || |||| ||  ||||||||||||| ||||||||||||||||||||    
T  7962514 ccttcatttatgaaattttcaatatcttcttttttctttccaatagaagaagagaccttatccagccaatttgaata 7962590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 344
Target Start/End: Complemental strand, 24351184 - 24351088
Alignment:
Q  248 tcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttcttctcttc 344  Q
    ||||||| || || |||| ||||||| |  ||||| | ||| || ||||| |||||||||||||||||||||| |||||| ||||  ||||||||||    
T  24351184 tcatcatcatacattaaatttgatataaggccctcttctttcagcttatcaacttgataaacaccttcatttatgaagttctcaatatcttctcttc 24351088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 24350999 - 24350959
Alignment:
Q  358 agaagagactttatccagccaatttgaatagatataatcta 398  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  24350999 agaagagactttatccagccagtttgtatagatattatcta 24350959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University