View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_high_21 (Length: 518)

Name: NF16561_high_21
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_high_21
NF16561_high_21
[»] chr6 (6 HSPs)
chr6 (1-507)||(2386290-2386795)
chr6 (285-333)||(24333044-24333092)
chr6 (286-327)||(3525236-3525277)
chr6 (288-329)||(4308887-4308928)
chr6 (288-325)||(31776191-31776228)
chr6 (287-319)||(30536883-30536915)
[»] chr2 (7 HSPs)
chr2 (287-329)||(37276854-37276896)
chr2 (288-329)||(37419586-37419627)
chr2 (287-329)||(1830149-1830191)
chr2 (287-333)||(15370241-15370287)
chr2 (289-326)||(40059381-40059418)
chr2 (289-326)||(40085281-40085318)
chr2 (290-326)||(43985322-43985358)
[»] chr4 (11 HSPs)
chr4 (286-319)||(28615454-28615487)
chr4 (286-329)||(679401-679444)
chr4 (286-333)||(41433481-41433528)
chr4 (288-331)||(53034718-53034761)
chr4 (287-329)||(22662169-22662211)
chr4 (287-329)||(22666648-22666690)
chr4 (286-327)||(27043747-27043788)
chr4 (288-321)||(52428782-52428815)
chr4 (286-318)||(7367971-7368003)
chr4 (287-327)||(25571371-25571411)
chr4 (288-336)||(54575522-54575570)
[»] chr3 (5 HSPs)
chr3 (286-327)||(25447162-25447203)
chr3 (286-327)||(36507009-36507050)
chr3 (286-328)||(47903997-47904039)
chr3 (290-327)||(26911703-26911740)
chr3 (291-327)||(33405114-33405150)
[»] chr8 (3 HSPs)
chr8 (290-333)||(39551130-39551173)
chr8 (286-319)||(10727464-10727497)
chr8 (287-327)||(38602439-38602479)
[»] chr7 (5 HSPs)
chr7 (286-333)||(28691753-28691800)
chr7 (286-333)||(41040271-41040318)
chr7 (290-327)||(9210933-9210970)
chr7 (286-327)||(37064385-37064426)
chr7 (287-327)||(44822070-44822110)
[»] chr5 (6 HSPs)
chr5 (290-337)||(18286893-18286940)
chr5 (287-329)||(3280654-3280696)
chr5 (286-327)||(32197845-32197886)
chr5 (286-318)||(10638452-10638484)
chr5 (287-319)||(32010065-32010097)
chr5 (287-319)||(40335791-40335823)
[»] chr1 (4 HSPs)
chr1 (294-333)||(4200340-4200379)
chr1 (287-337)||(37241739-37241788)
chr1 (288-329)||(6292602-6292643)
chr1 (286-319)||(30013996-30014029)


Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 2386290 - 2386795
Alignment:
Q  1 ttgttgctacttgtatcatctgtgttactacaaggtagttcttcatcttcaccaagttgatcagctccaaaggcttgtagagatggattatatccacctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386290 ttgttgctacttgtatcatctgtgttactacaaggtagttcttcatcttcaccaagttgatcagctccaaaggcttgtagagatggattatatccacctt 2386389  T
Q  101 ggcctaatgagattaaatagagagataatgaaagaaatgaagatgacattgatctgtttttgtgatgccatgatcttgctagggctgttgttgtcaatgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386390 ggcctaatgagattaaatagagagataatgaaagaaatgaagatgacattgatctgtttttgtgatgccatgatcttgctagggctgttgttgtcaatgc 2386489  T
Q  201 tgcaagtccctataggaagaaaacacaagaaaaaatgtcaataactagtgaagaaaaagttgaatattcaaattaacagtaactttctgtttggattgac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386490 tgcaagtccctataggaagaaaacacaagaaaaaatgtcaataactagtgaagaaaaagttgaatattcaaattaacagtaactttctgtttggattgac 2386589  T
Q  301 ttatttaagtttatctactgatataagcatttgcgagcctttttgagaatatacagaaacagcttaaaaaatatccatgtgtagttttcagcttactttc 400  Q
    |||||||||||||||||| || |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  2386590 ttatttaagtttatctacaga-aacagcatttgcgagcctttttgagaatatacagaaacagcttaaaaaatgtccattcgtagttttcagcttactttc 2386688  T
Q  401 ataagccctcaaggactagcttatgataacatcttatatgaattgtgtgtttctcaaattagtagcattgtcgttgtgtcagtgtctgtgtcgtggatga 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  2386689 ataagccctcaaggactagcttatgataacatcttatatgaattgtgtgtttctcaaattagtagcattgtcgttgtgtcagtgtctgtgtcgtgtctga 2386788  T
Q  501 tgtccat 507  Q
    |||||||    
T  2386789 tgtccat 2386795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 24333092 - 24333044
Alignment:
Q  285 ttctgtttggattgacttatttaagtttatctactgatataagcatttg 333  Q
    |||||||||||||||| ||||| ||||||| |||||| |||||||||||    
T  24333092 ttctgtttggattgacatatttcagtttatgtactgacataagcatttg 24333044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 3525277 - 3525236
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataag 327  Q
    |||||||||||||||| ||||||||||||||| ||| |||||    
T  3525277 tctgtttggattgactaatttaagtttatctagtgacataag 3525236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 4308928 - 4308887
Alignment:
Q  288 tgtttggattgacttatttaagtttatctactgatataagca 329  Q
    ||||||||||| ||||||| |||||||||||||| |||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataagca 4308887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 31776191 - 31776228
Alignment:
Q  288 tgtttggattgacttatttaagtttatctactgatata 325  Q
    ||||||||||||||||||| || |||||||||||||||    
T  31776191 tgtttggattgacttatttgagcttatctactgatata 31776228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 30536883 - 30536915
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctact 319  Q
    |||||||||||||||||||| ||||||||||||    
T  30536883 ctgtttggattgacttatttgagtttatctact 30536915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 37276896 - 37276854
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctactgatataagca 329  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  37276896 ctgtttggatcgacttatttaagtttatctactaatataagca 37276854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 37419586 - 37419627
Alignment:
Q  288 tgtttggattgacttatttaagtttatctactgatataagca 329  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  37419586 tgtttggattgacttatttgagtttatctacttatataagca 37419627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 1830191 - 1830149
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctactgatataagca 329  Q
    |||||||||||||||||||| ||||||| |||||| |||||||    
T  1830191 ctgtttggattgacttatttgagtttatttactgacataagca 1830149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 15370241 - 15370287
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctactgatataagcatttg 333  Q
    |||||||||||||||||||| || ||||||||||  |||||||||||    
T  15370241 ctgtttggattgacttatttgagcttatctactggcataagcatttg 15370287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 40059381 - 40059418
Alignment:
Q  289 gtttggattgacttatttaagtttatctactgatataa 326  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40059381 gtttggattgacttatttgagtttatctactgacataa 40059418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 40085281 - 40085318
Alignment:
Q  289 gtttggattgacttatttaagtttatctactgatataa 326  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40085281 gtttggattgacttatttgagtttatctactgacataa 40085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 43985358 - 43985322
Alignment:
Q  290 tttggattgacttatttaagtttatctactgatataa 326  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  43985358 tttggatcgacttatttaagtttatctactgacataa 43985322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 28615487 - 28615454
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctact 319  Q
    ||||||||||||||||||||||||||||||||||    
T  28615487 tctgtttggattgacttatttaagtttatctact 28615454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 679444 - 679401
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataagca 329  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||    
T  679444 tctgtttgaattgacttatttgagtttatctactggtataagca 679401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 41433528 - 41433481
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataagcatttg 333  Q
    |||||||| |||||||||||| ||||||||| |||| |||||||||||    
T  41433528 tctgtttgaattgacttatttgagtttatctcctgacataagcatttg 41433481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 53034718 - 53034761
Alignment:
Q  288 tgtttggattgacttatttaagtttatctactgatataagcatt 331  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  53034718 tgtttggtttgacttatttgagcttatctactgatataagcatt 53034761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 22662169 - 22662211
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctactgatataagca 329  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  22662169 ctgtttggattgacttatttgagtttatctactaacataagca 22662211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 22666648 - 22666690
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctactgatataagca 329  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  22666648 ctgtttggattgacttatttgagtttatctactaacataagca 22666690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 27043747 - 27043788
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataag 327  Q
    ||||||||||||||||||||| || ||||||||||| |||||    
T  27043747 tctgtttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 52428815 - 52428782
Alignment:
Q  288 tgtttggattgacttatttaagtttatctactga 321  Q
    ||||||||||||||||||| ||||||||||||||    
T  52428815 tgtttggattgacttatttgagtttatctactga 52428782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 7367971 - 7368003
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctac 318  Q
    ||||||||||||||||||||| |||||||||||    
T  7367971 tctgtttggattgacttatttgagtttatctac 7368003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 25571411 - 25571371
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctactgatataag 327  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  25571411 ctgtttggattggcttatttgagtttatctactgacataag 25571371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 54575522 - 54575570
Alignment:
Q  288 tgtttggattgacttatttaagtttatctactgatataagcatttgcga 336  Q
    ||||||||||||||||||| ||||||| ||  || ||||||||||||||    
T  54575522 tgtttggattgacttatttgagtttatttatagacataagcatttgcga 54575570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 25447162 - 25447203
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataag 327  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  25447162 tctgtttggattgacttatttgagtttatctactgacataag 25447203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 36507009 - 36507050
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataag 327  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  36507009 tctgtttggattggcttatttgagtttatctactgatataag 36507050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 47903997 - 47904039
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataagc 328  Q
    ||||||||||||||||||||| ||||||||  |||||||||||    
T  47903997 tctgtttggattgacttatttgagtttatcctctgatataagc 47904039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 26911740 - 26911703
Alignment:
Q  290 tttggattgacttatttaagtttatctactgatataag 327  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  26911740 tttggattgacttatttgagtttatctactgacataag 26911703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 33405114 - 33405150
Alignment:
Q  291 ttggattgacttatttaagtttatctactgatataag 327  Q
    |||||||||||||||| |||||||||||||| |||||    
T  33405114 ttggattgacttatttgagtttatctactgacataag 33405150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 39551130 - 39551173
Alignment:
Q  290 tttggattgacttatttaagtttatctactgatataagcatttg 333  Q
    ||||||||||||||||| || |||||||| ||||||||||||||    
T  39551130 tttggattgacttatttgagattatctacggatataagcatttg 39551173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 10727497 - 10727464
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctact 319  Q
    ||||||||||||||||||||| ||||||||||||    
T  10727497 tctgtttggattgacttatttgagtttatctact 10727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 38602479 - 38602439
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctactgatataag 327  Q
    |||||||||||||||||||| || ||||||||||| |||||    
T  38602479 ctgtttggattgacttatttgagcttatctactgacataag 38602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 28691753 - 28691800
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataagcatttg 333  Q
    ||||||||||||||||||||| ||||||||| || | |||||||||||    
T  28691753 tctgtttggattgacttatttgagtttatctgctaacataagcatttg 28691800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 41040318 - 41040271
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataagcatttg 333  Q
    |||||||| ||||| |||||| |||||||||||||||||||| |||||    
T  41040318 tctgtttgaattgatttatttgagtttatctactgatataagtatttg 41040271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 9210970 - 9210933
Alignment:
Q  290 tttggattgacttatttaagtttatctactgatataag 327  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataag 9210933  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 37064385 - 37064426
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataag 327  Q
    ||||||||||||||||||||| |  |||||||||||||||||    
T  37064385 tctgtttggattgacttatttgatcttatctactgatataag 37064426  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 44822110 - 44822070
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctactgatataag 327  Q
    |||||||||||||||||||| ||||||||| |||| |||||    
T  44822110 ctgtttggattgacttatttgagtttatctgctgacataag 44822070  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 18286940 - 18286893
Alignment:
Q  290 tttggattgacttatttaagtttatctactgatataagcatttgcgag 337  Q
    |||||||||| |||||  |||||||||||| |||||||||||||||||    
T  18286940 tttggattgaattattcgagtttatctactaatataagcatttgcgag 18286893  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 3280654 - 3280696
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctactgatataagca 329  Q
    ||||||||||||||||||||||  |||||||||||| ||||||    
T  3280654 ctgtttggattgacttatttaaacttatctactgatttaagca 3280696  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 32197886 - 32197845
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctactgatataag 327  Q
    ||||||||||||||||| ||| |||||||||||||| |||||    
T  32197886 tctgtttggattgacttttttgagtttatctactgacataag 32197845  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 10638452 - 10638484
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctac 318  Q
    |||||||||||||||||||||||| ||||||||    
T  10638452 tctgtttggattgacttatttaagattatctac 10638484  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 32010097 - 32010065
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctact 319  Q
    |||||||||||||||||||| ||||||||||||    
T  32010097 ctgtttggattgacttatttgagtttatctact 32010065  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 40335791 - 40335823
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctact 319  Q
    |||||||||||||||||||| ||||||||||||    
T  40335791 ctgtttggattgacttatttgagtttatctact 40335823  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 333
Target Start/End: Complemental strand, 4200379 - 4200340
Alignment:
Q  294 gattgacttatttaagtttatctactgatataagcatttg 333  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  4200379 gattgacttattttagtttatatactgatataagcatttg 4200340  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 37241739 - 37241788
Alignment:
Q  287 ctgtttggattgacttatttaagtttatctactgatataagcatttgcgag 337  Q
    ||||||||||||||||||||||| ||||||||||  ||||||| |||||||    
T  37241739 ctgtttggattgacttatttaagcttatctactg-cataagcacttgcgag 37241788  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 6292643 - 6292602
Alignment:
Q  288 tgtttggattgacttatttaagtttatctactgatataagca 329  Q
    ||||||||||||||||||| || ||||||||||| |||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagca 6292602  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 30013996 - 30014029
Alignment:
Q  286 tctgtttggattgacttatttaagtttatctact 319  Q
    ||||||||||||||||||||| ||||||||||||    
T  30013996 tctgtttggattgacttatttgagtttatctact 30014029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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