View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_27 (Length: 502)
Name: NF16561_high_27
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Original strand, 7870978 - 7871448
Alignment:
| Q |
19 |
gatgattgatgcataacagaagaagagtctatgaagactatatttatgttagtggctagtgtagggtatttaggagtagtcagaaatgtttttaaattgg |
118 |
Q |
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| T |
7870978 |
gatgattgatgcataacagaagaagagtctatgaagactatatttatgttagtggctagtgtagggtatttaggagtagtcagaaatgtttttaaattgg |
7871077 |
T |
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| Q |
119 |
ataaactcacatgtataaccggagttgtaaaaaattgtatttggcatcgaaaatatttgctctttatttatgacattgtggcgacgaataatcgtcatta |
218 |
Q |
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| T |
7871078 |
ataaactcacatgtataaccggagttgtaaaa--ttgtatttggcatcgaaaatatttggtctttatttatgacattgtggcaacgaataatcgttatta |
7871175 |
T |
|
| Q |
219 |
tgannnnnnnnnaccaaatcattcgttttaatctgattaaacaaaaaacgaactaatttgattgaaggtgtttggagaaatgtcaggatgatctaatcac |
318 |
Q |
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| T |
7871176 |
tgatttttttt-atcaagttattcgatttaatctgattaaataaaaaacgaactaatttgattgaaggtgtttggagaaatgtcaggatgatctaatcac |
7871274 |
T |
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| Q |
319 |
actctcaccccaaaacaacgttttaagtaccaccttttgttgctcaaacaacattttaaggacacttgttagtatttttcataaatcaaatattagcgtt |
418 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7871275 |
actctcaccccaaaacaacgttttaaataccaccttttgttgctcaaacaacgttttaaggacacttgttagtatttttcataaatcaaatattagcgtt |
7871374 |
T |
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| Q |
419 |
ataaatattatgtgtaaattgcattgaaaatatccattggatagataagtatttatttcaatctttctcctttg |
492 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
7871375 |
atgaatattatgtgtaaattgcattgaaaatatccgttggatagataagtctttatttcaatctttctcctttg |
7871448 |
T |
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