View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_29 (Length: 487)
Name: NF16561_high_29
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 4338413 - 4337940
Alignment:
| Q |
1 |
tcaatattgtgcatgctaagaatcttttgggatcttgatagattttgtctaactataagaaaagttttagagaaaacacgagcaaagactgagaaaatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4338413 |
tcaatattgtgcatgctaagaatcttttgggatcttgatagattttgtctaactataagaaaagttttagagaaaacacgagcaaagactgagaaaatgc |
4338314 |
T |
|
| Q |
101 |
tggcacacaaaaagaaagttgaaattaaataaaacattcattgtaatggtgcattaccaagaaaggcactgatgaatccagtctagctgcagtagggtga |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4338313 |
tggctcacaaaaagaaagttgaaattaaataaaacattcattgtaatggtgcattaccaagaaaggcactgatgaatccagtctagctgcagtagggtga |
4338214 |
T |
|
| Q |
201 |
aacaatgtgtgcggcaagcaagatgctcataccctcaacatcaagggaacatgtctcctcttaaacagttctggaacctaccacaagaaagagaaaccct |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4338213 |
aacaatgtgtgcggcaagccagatgctcataccctcaacatcaagggaacaggtctcctcttaaacagttctggaacctaccacaagaaagagaaaccct |
4338114 |
T |
|
| Q |
301 |
ctatgtcagcaagtggaaccaattttcaccaatcaaaattagaaagaaaaagaatggcaattctcgatgcgagcatcatggcacaccgataaaaaatatg |
400 |
Q |
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| T |
4338113 |
ctatgtcagcaagcggaaccaattttcaccaatcaaaattagaaagaaaaagaatggcaattctcgatgcgagcatcatggcacaccgataaaaaatatg |
4338014 |
T |
|
| Q |
401 |
catgttaaacaaaataattcttcattcttttttgactggaataactcttccttcttagatagcacataatatga |
474 |
Q |
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| T |
4338013 |
catgttaaacaaaataattcttcattcttttttgactggaataactcttccttcttagagagcacataatatga |
4337940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 199 - 422
Target Start/End: Complemental strand, 4347310 - 4347088
Alignment:
| Q |
199 |
gaaacaatgtgtgcggcaagcaagatgctcataccctcaacatcaagggaacatgtctcctcttaaacagttctggaacctaccacaagaaagagaaacc |
298 |
Q |
| |
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|||||||||| |||||||||||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||||| | |
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| T |
4347310 |
gaaacaatgtatgcggcaagcaagaagccaatatcctcaacatcaagggaacaggtct-ctcttaaacagttctggaacaaactacaagaaagagaaatc |
4347212 |
T |
|
| Q |
299 |
ctctatgtcagcaagtggaaccaattttcaccaatcaaaattagaaagaaaaagaatggcaattctcgatgcgagcatcatggcacaccgataaaaaata |
398 |
Q |
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||| ||| || |||||| || ||| |||||||| ||||||| ||||||||| |||||||| ||||||||||| || |||| | |||||||| | |
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| T |
4347211 |
tcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatcctgacacaacaataaaaaaga |
4347112 |
T |
|
| Q |
399 |
tgcatgttaaacaaaataattctt |
422 |
Q |
| |
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|||||| ||||||||||| ||||| |
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| T |
4347111 |
tgcatgctaaacaaaatagttctt |
4347088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 199 - 422
Target Start/End: Complemental strand, 4363737 - 4363514
Alignment:
| Q |
199 |
gaaacaatgtgtgcggcaagcaagatgctcataccctcaacatcaagggaaca-tgtctcctcttaaacagttctggaacctaccacaagaaagagaaac |
297 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||| ||||||||||||||||||| |||| |||||||| |||||||||||| || ||||||||| |||| |
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| T |
4363737 |
gaaacaatatgtgcagcaagcaagaagctcatatcctcaacatcaagggaacagggtct-ctcttaaaaagttctggaaccaacaacaagaaagggaaat |
4363639 |
T |
|
| Q |
298 |
cctctatgtcagcaagtggaaccaattttcaccaatcaaaattagaaagaaaaagaatggcaattctcgatgcgagcatcatggcacaccgataaaaaat |
397 |
Q |
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| ||| |||| || |||||| | ||||||||| || ||||||| ||||||||| |||||||| |||| |||||| || |||||| || ||||| |
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| T |
4363638 |
ctcctacaccagccagcaaaaccaaatcacaccaatcataaatagaaaggaaaagaatgacaattctcaatgcaagcatcctgccacaccaatgaaaaag |
4363539 |
T |
|
| Q |
398 |
atgcatgttaaacaaaataattctt |
422 |
Q |
| |
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||||||| ||||||||||| ||||| |
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| T |
4363538 |
atgcatgctaaacaaaatagttctt |
4363514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 4118720 - 4118814
Alignment:
| Q |
335 |
aaaattagaaagaaaaagaatggcaattctcgatgcgagcatcatggcacaccgataaaaaatatgcatgttaaacaaaataattcttcattctt |
429 |
Q |
| |
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|||| ||||||| |||||| || ||| ||| |||| |||||| ||||||| | |||||||||||||||| |||| ||||||| | ||||||||| |
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| T |
4118720 |
aaaaatagaaaggaaaagagtgacaaatcttaatgcaagcatcttggcacatcaataaaaaatatgcatgctaaataaaataacttttcattctt |
4118814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 4121832 - 4121882
Alignment:
| Q |
379 |
tggcacaccgataaaaaatatgcatgttaaacaaaataattcttcattctt |
429 |
Q |
| |
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||||| ||| || ||||||||||||| |||||||||||||||||||||||| |
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| T |
4121832 |
tggcataccaatgaaaaatatgcatgctaaacaaaataattcttcattctt |
4121882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 4131537 - 4131607
Alignment:
| Q |
317 |
aaccaattttcaccaatcaaaattagaaagaaaaagaatggcaattctcgatgcgagcatcatggcacacc |
387 |
Q |
| |
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|||||| || |||||||||||| ||||||| ||||||||| |||||||| ||| || ||| ||||||||| |
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| T |
4131537 |
aaccaaattccaccaatcaaaaatagaaaggaaaagaatgacaattctcaatgaaagaatcttggcacacc |
4131607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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