View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_3 (Length: 840)
Name: NF16561_high_3
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 18109962 - 18110415
Alignment:
| Q |
1 |
tcaagagaccaatattccatcaccacaatctactaatttggaagaatcaaccaaagacatgaaaagtgattcacctcaaacttctcaaagcattgnnnnn |
100 |
Q |
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| T |
18109962 |
tcaagagaccaatattccaccaccacaatctactaatttggaagaatcaactaaagacatgaaaagtgattcacctcaaacttctcaaagcattgaaaaa |
18110061 |
T |
|
| Q |
101 |
nngacacaaaatgatgatgacacatcatctcaaattcctcaaaagggtcaacaagaatttgagccaaaaccaacatctaaagacacaaccaatgaccaaa |
200 |
Q |
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| T |
18110062 |
aagacacaaaatgatgatgacacatcatctcaaattcctcaaaagggtcaacaagaatttgagccaaaaccaacatctaaagacacaaccaatgaccaaa |
18110161 |
T |
|
| Q |
201 |
tagatgaaaagtctcaaaagggtcaagaagaatttgaaacaagaccaacatcaatagagagagccaaaacacaaatagatgaaaagcctcaaaatggtca |
300 |
Q |
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| T |
18110162 |
tagatgaaaagtctcaaaagggtcaagaagaatttgaaacaagaccaacatcaatagagagagccaaaacacaaatagatgaaaagcctcaaaatggtca |
18110261 |
T |
|
| Q |
301 |
acaagtgttggagtcaaaaccaacatctatagagagaaccaaaacacaaacaaatgaaaaggctcaaaagggtgaagaggaagtagaaccaaaaacaata |
400 |
Q |
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| T |
18110262 |
acaagtgttggagtcaaaaccaacatctatagagagaaccaaagcacaaacaaatgaaaaggctcaaaagggtgaagaggaagtagaaccaaaaacaata |
18110361 |
T |
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| Q |
401 |
gagaaattggttaccaaagaaaatttagaggaaaagatagtaggaatgagtgct |
454 |
Q |
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| T |
18110362 |
gagaaattggttaccaaagaaaatttagaggaaaagatagtaggaatgagtgct |
18110415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 516 - 823
Target Start/End: Original strand, 18110477 - 18110784
Alignment:
| Q |
516 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18110477 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
18110576 |
T |
|
| Q |
616 |
cagaattcctccaaatcaagaaggaaagaatggaatcagaaaatttgctgctacttcttctcagttcgtgacgagaattgctgaagggaaattgagtggt |
715 |
Q |
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| T |
18110577 |
cagaattcctcccaatcaagaaggaaagaatggaatcagaaaatttgctgctacttcttctcagtttgtgacgagaattgctgaagggaaattgagtggt |
18110676 |
T |
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| Q |
716 |
gaagagaaacatttggttgaaaatgtaggtgctgcagttctagtgattgctgcatttggagcctatgtgtcatattggttttcctcttaaaggagaacta |
815 |
Q |
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| T |
18110677 |
gaagagaaacatttagttgaaaatgtaggtgctgcagttctagtgattgctgcatttggagcctatgtgtcatattggttttcctcttaaaggagaacta |
18110776 |
T |
|
| Q |
816 |
cataattt |
823 |
Q |
| |
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|||||||| |
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|
| T |
18110777 |
cataattt |
18110784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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