View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16561_high_38 (Length: 427)
Name: NF16561_high_38
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 86 - 412
Target Start/End: Complemental strand, 15293229 - 15292903
Alignment:
| Q |
86 |
agtggctagcaattcaattttcaggttgataaatggtaaatttggaattcgaaccctaactgttgtataaggcaatgttcctaccaacttaaatatgcta |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
15293229 |
agtggctagcaattcaattttcaggttgataaatggtaaatttggaattcgaaccttaactgttgtataacgcaatattcctaccaacttaaatatgcta |
15293130 |
T |
|
| Q |
186 |
acaagaacaataccatcatcctttctatcacaatttagctggtgaaaagataaacaaatgcaaactatcatctttttacccatataaaaaagtattgtaa |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15293129 |
acaagaacaataccatcatcctttctatcacaatttcgctggtgaaaagataaacaaatgcaaactatcatttttttacccatataaaaaagtattgtaa |
15293030 |
T |
|
| Q |
286 |
gtgacgtatttataaggagagagaataattttgatgtaacattactataaaattttcttagaagtttatgtaatcaaaatgacaacaagattcattttgt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15293029 |
gtgacgtatttataaggagagagaataattttgatgtaacattactataaaattttcttagaagtttatgtaatcaaaatgacaacaagattcattttgt |
15292930 |
T |
|
| Q |
386 |
tacatacatagcgacgtgtgcaaaata |
412 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15292929 |
tacatacatagcgacgtgtgcaaaata |
15292903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 15293327 - 15293287
Alignment:
| Q |
16 |
aattataacactatttacttctaataaaatacaacaccatc |
56 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
15293327 |
aattataacactatttatttctaataaaatataacaccatc |
15293287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University