View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_39 (Length: 424)
Name: NF16561_high_39
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 3 - 409
Target Start/End: Original strand, 5822641 - 5823047
Alignment:
| Q |
3 |
atactttttgttgttgtagcgattgatatttgaagcttatcatgcttgaattgcagtgacaatttcattattattaacttaggtcccttggtcaaactac |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822641 |
atactttttgttgttgtagcgattgatatttgaagcttatcatgcttgaattgcattgacaatttcattattattaacttaggtcccttggtcaaactac |
5822740 |
T |
|
| Q |
103 |
accatgcataaatgcatttgcaacaggccaagtagcagcatgtaagatgttcgaaacaattaaaagaaaaccgaacattgatgcttatgacacaagtggt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822741 |
accatgcataaatgcatttgcaacaggccaagtagcagcatgtaagatgttcgagacaattaaaagaaaaccgaacattgatgcttatgacacaagtggt |
5822840 |
T |
|
| Q |
203 |
gttatactggagaatataaagggaggcattgaactcaaagatgtttactttagataccctgcaagaccagatgtgcagatctttgccggattctcattct |
302 |
Q |
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|||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822841 |
gttataatggagaacataaagggagacattgaactcaaagatgtttactttagataccctgcaagaccagatgtgcagatctttgccggattctcattct |
5822940 |
T |
|
| Q |
303 |
atattccaagtggcacaactgctgctttagtaggtcaaagtggtagtggaaagtcaactataattagtttattagaaagattttatgatcctgaagctgg |
402 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5822941 |
atattccaagtggcacaactgctgctttagtcggtcaaagtggtagtggaaagtcaactataattagtttattagaaagattctatgatcctgaagctgg |
5823040 |
T |
|
| Q |
403 |
agaagtg |
409 |
Q |
| |
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||||||| |
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| T |
5823041 |
agaagtg |
5823047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 102 - 408
Target Start/End: Original strand, 5765082 - 5765388
Alignment:
| Q |
102 |
caccatgcataaatgcatttgcaacaggccaagtagcagcatgtaagatgttcgaaacaattaaaagaaaaccgaacattgatgcttatgacacaagtgg |
201 |
Q |
| |
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|||||||| || |||||||||| ||||||||| |||||||| ||| |||||||| |||||||||||||| || || |||||||| |||||||||||||| |
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| T |
5765082 |
caccatgcttagatgcatttgctgcaggccaagcagcagcatataaaatgttcgagacaattaaaagaaagcctaaaattgatgcatatgacacaagtgg |
5765181 |
T |
|
| Q |
202 |
tgttatactggagaatataaagggaggcattgaactcaaagatgtttactttagataccctgcaagaccagatgtgcagatctttgccggattctcattc |
301 |
Q |
| |
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| | | || | | ||||| |||| |||||||| ||||||||||| || || ||||||||||| || |||||||||||||||| || |||||||| |
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| T |
5765182 |
tactgtcttgaaagacataaatggagatattgaacttaaagatgtttatttcagttaccctgcaaggcctgatgtgcagatctttgatggtttctcattg |
5765281 |
T |
|
| Q |
302 |
tatattccaagtggcacaactgctgctttagtaggtcaaagtggtagtggaaagtcaactataattagtttattagaaagattttatgatcctgaagctg |
401 |
Q |
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| | ||||||||||||||||| ||||||| || ||||||||||| ||||||||||| ||| |||| |||||||| |||||||| ||||| ||||| || | |
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| T |
5765282 |
tttgttccaagtggcacaactactgctttggtgggtcaaagtggaagtggaaagtccactgtaatcagtttattggaaagattctatgaccctgatgccg |
5765381 |
T |
|
| Q |
402 |
gagaagt |
408 |
Q |
| |
|
||||||| |
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|
| T |
5765382 |
gagaagt |
5765388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 116 - 408
Target Start/End: Complemental strand, 5832734 - 5832442
Alignment:
| Q |
116 |
gcatttgcaacaggccaagtagcagcatgtaagatgttcgaaacaattaaaagaaaaccgaacattgatgcttatgacacaagtggtgttatactggaga |
215 |
Q |
| |
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|||||||| ||||||||| |||||||| ||| ||||| || ||||||| |||||| || | ||||||||| |||||| ||||||| | | |||| |
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| T |
5832734 |
gcatttgctgcaggccaagcagcagcatataaaatgtttgagacaattagaagaaagcccatcattgatgcaagtgacaccagtggtgctgtcttggaag |
5832635 |
T |
|
| Q |
216 |
atataaagggaggcattgaactcaaagatgtttactttagataccctgcaagaccagatgtgcagatctttgccggattctcattctatattccaagtgg |
315 |
Q |
| |
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| |||||||||| |||||||||| |||||||| ||| |||||||||||||| || |||||||||||||||| || |||||||| | | |||||||||| |
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| T |
5832634 |
acataaagggagatattgaactcagagatgtttccttcagataccctgcaaggcctgatgtgcagatctttgatggtttctcattgtttgttccaagtgg |
5832535 |
T |
|
| Q |
316 |
cacaactgctgctttagtaggtcaaagtggtagtggaaagtcaactataattagtttattagaaagattttatgatcctgaagctggagaagt |
408 |
Q |
| |
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||||||| ||||||| || ||||||||||| ||||||||||| ||| |||| |||||||| |||||||| ||||||||||| ||||| ||||| |
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|
| T |
5832534 |
cacaactactgctttggtgggtcaaagtggaagtggaaagtctactgtaatcagtttattggaaagattctatgatcctgacgctggcgaagt |
5832442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 114 - 408
Target Start/End: Complemental strand, 29330260 - 29329966
Alignment:
| Q |
114 |
atgcatttgcaacaggccaagtagcagcatgtaagatgttcgaaacaattaaaagaaaaccgaacattgatgcttatgacacaagtggtgttatactgga |
213 |
Q |
| |
|
|||||||||| ||||| ||| |||||||| ||| ||||| || || ||||||||||| || || || ||||| ||||| || |||||| || | |||| |
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| T |
29330260 |
atgcatttgctgcaggcaaagcagcagcatataaaatgtttgagacgattaaaagaaagccaaaaatcgatgcatatgataccagtggtcttgtgttgga |
29330161 |
T |
|
| Q |
214 |
gaatataaagggaggcattgaactcaaagatgtttactttagataccctgcaagaccagatgtgcagatctttgccggattctcattctatattccaagt |
313 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||||| | | |||||||| |
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|
| T |
29330160 |
agatataaagggagatattgaactcagagatgttcacttcagataccctgcaagaccagatgtggagatctttgctggattctcattgtttgttccaagt |
29330061 |
T |
|
| Q |
314 |
ggcacaactgctgctttagtaggtcaaagtggtagtggaaagtcaactataattagtttattagaaagattttatgatcctgaagctggagaagt |
408 |
Q |
| |
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||||||||| ||||||| || ||||||||||| ||||| ||||| ||| |||| |||||| | |||||||| ||||| ||| | ||||||||||| |
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|
| T |
29330060 |
ggcacaactactgctttggtcggtcaaagtggaagtgggaagtctactgtaatcagtttactggaaagattctatgaccctaatgctggagaagt |
29329966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 51156440 - 51156496
Alignment:
| Q |
145 |
taagatgttcgaaacaattaaaagaaaaccgaacattgatgcttatgacacaagtgg |
201 |
Q |
| |
|
||||||||||||||| |||||||| | ||| | ||||||||||||||||| ||||| |
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|
| T |
51156440 |
taagatgttcgaaacgattaaaaggatgccggaaattgatgcttatgacactagtgg |
51156496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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