View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16561_high_40 (Length: 423)
Name: NF16561_high_40
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_40 |
 | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 10032439 - 10032052
Alignment:
| Q |
19 |
gtatttgtattatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaa |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10032439 |
gtatttgcattatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaa |
10032340 |
T |
|
| Q |
119 |
atgtgcatgccacctcagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10032339 |
atgtgcatgccacctcagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatcaatgaagggacttactagttcaccccaatc |
10032240 |
T |
|
| Q |
219 |
attataattgtcattccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgcta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
10032239 |
attataattgtcattccacagatcatccaaaacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacatcaagatctttgcta |
10032140 |
T |
|
| Q |
319 |
tcccaagttctggaagtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttca |
406 |
Q |
| |
|
||| ||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10032139 |
tccgaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaagcccaggccttca |
10032052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 10261134 - 10260746
Alignment:
| Q |
19 |
gtatttgtattatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10261134 |
gtatttgtattatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacagtcttcattcgatagaagttttagttcatgtataggaa |
10261035 |
T |
|
| Q |
119 |
atgtgcatgccacctcagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
10261034 |
atgtgcatgccacctcagcaactttttgttgccgcgttgttataatcaccatgcttccaggttttccatcaacgaaggggcttactagttcaccccaatc |
10260935 |
T |
|
| Q |
219 |
attataattgtcattccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgcta |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
10260934 |
attataattgtcattccacagatcgtccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggatgtcaagattattgata |
10260835 |
T |
|
| Q |
319 |
tcccaagttctggaagtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcat |
407 |
Q |
| |
|
|||||| |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10260834 |
tcccaatttctagaagtgactgattcaaggagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcat |
10260746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 22 - 406
Target Start/End: Complemental strand, 11769667 - 11769283
Alignment:
| Q |
22 |
tttgtattatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatg |
121 |
Q |
| |
|
|||||| |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11769667 |
tttgtactatggtgaaactcatcacttcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttaattcatgtataggaaatg |
11769568 |
T |
|
| Q |
122 |
tgcatgccacctcagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcatt |
221 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
11769567 |
tgtgtgccacctcagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccattactgaagggacttactagttcaccccaatcatt |
11769468 |
T |
|
| Q |
222 |
ataattgtcattccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcc |
321 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11769467 |
ataattgtcattccacatatcatctaacacaaacaaaaatcttttctccctcaagtttttctttaactcaactcgaaggatatcaagattattgctatcc |
11769368 |
T |
|
| Q |
322 |
caagttctggaagtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttca |
406 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
11769367 |
caagttcttgaagtgaccgattcaaggagagacctggttactctcataatatcaaaatcctcagacacgcaagcccatgccttca |
11769283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 10127364 - 10126977
Alignment:
| Q |
19 |
gtatttgtattatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
10127364 |
gtatttgtattatgctgaatctcatcacttcccaatgcatgctttgatagtaaagaccaacaatcttcatctgatagtacttttagttcatgtataggaa |
10127265 |
T |
|
| Q |
119 |
atgtgcatgccacctcagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatc |
218 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
10127264 |
atgtgcgtgccacctcagcaactttttgttggcgcgttgttataatcaccatgcttccaggttttccattaatgaagggacttactagctcatcccaatc |
10127165 |
T |
|
| Q |
219 |
attataattgtcattccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgcta |
318 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
10127164 |
attacaattgtcattccatagatcgtccaacacaaacaaaaatcttttttccctcgagattttctttaacgcaactcgaaggacatcaagattattgcta |
10127065 |
T |
|
| Q |
319 |
tcccaagttctggaagtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttca |
406 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
10127064 |
tcccaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttca |
10126977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 34 - 406
Target Start/End: Original strand, 10433692 - 10434064
Alignment:
| Q |
34 |
tgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacct |
133 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| |||||||| |
|
|
| T |
10433692 |
tgaaactcatcactgcccaatgcatgcttcgagagtaaagaccaacaatcttcatttgatagaagttctaatttatgtataggaaatgtgtgtgccacct |
10433791 |
T |
|
| Q |
134 |
cagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcatt |
233 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10433792 |
cagcaactttttgttggcgcgttgttataatcaccatgcttccgggttttccatcaatgaagggacttactagttcaccccaatcattataattgtcatt |
10433891 |
T |
|
| Q |
234 |
ccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaa |
333 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10433892 |
ccacagatcgtccaacacaaacaaaaatcttttctccctcgagtttttctttaactcaacacgaaggacatcaagattattgctatcccaagttctggaa |
10433991 |
T |
|
| Q |
334 |
gtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttca |
406 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
10433992 |
gtgaccgattcaaggagagacttggttactttcaaaatatcaaaatcctgagacacacaagcccaggccttca |
10434064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 29 - 406
Target Start/End: Original strand, 10375488 - 10375865
Alignment:
| Q |
29 |
tatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgc |
128 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10375488 |
tatggtgaaactcatcactacccaatgcatgctttgagagtaaagaccaacagtcttcattcgatagaagttttagttcatgtataggaaatgtgcatgc |
10375587 |
T |
|
| Q |
129 |
cacctcagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattg |
228 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10375588 |
taccttagcaacttttcgttggcgcgttgttataatcaccatgcttccgggttttccatcaatgaagggacttactagttcaccccaatcataataattg |
10375687 |
T |
|
| Q |
229 |
tcattccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttc |
328 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
10375688 |
tcattccacaaatcatccaacacaaacaaaaatcttttctcccttgattttttctttaacgcaactcgaaggacatcaagattattgctatcccatgttc |
10375787 |
T |
|
| Q |
329 |
tggaagtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttca |
406 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10375788 |
ttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttca |
10375865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 29 - 407
Target Start/End: Complemental strand, 9850165 - 9849787
Alignment:
| Q |
29 |
tatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgc |
128 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||| ||||||||| ||| |
|
|
| T |
9850165 |
tatggtgaaactcatcacttcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagatctaatttatgtattggaaatgtgtgtgc |
9850066 |
T |
|
| Q |
129 |
cacctcagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattg |
228 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9850065 |
cacctcagcaactttttgttggcgtgttgttataatcaccatgcttccgggttttccatcaatgaagggacttactagttcaccccaatcattataattg |
9849966 |
T |
|
| Q |
229 |
tcattccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttc |
328 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
9849965 |
tcattccacaaatcatccaacacaaacaaaaatcttttctcccttgagtttttctttaacgcaactcgaaggacatcaagattattgctatcccatgtta |
9849866 |
T |
|
| Q |
329 |
tggaagtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcat |
407 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9849865 |
tggaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccacgccctcat |
9849787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 29 - 407
Target Start/End: Complemental strand, 9839287 - 9838909
Alignment:
| Q |
29 |
tatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgc |
128 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||| ||||||||| ||| |
|
|
| T |
9839287 |
tatggtgaaactcatcacttcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagatctaatttatgtattggaaatgtgtgtgc |
9839188 |
T |
|
| Q |
129 |
cacctcagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattg |
228 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9839187 |
cacctcagcaactttttgttggcgcgttgttataatcaccatgcttccgggttttccatcaatgaagggacttactagttcaccccaatcattataattg |
9839088 |
T |
|
| Q |
229 |
tcattccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttc |
328 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
9839087 |
tcattccacaaatcatccaacacaaacaaaaatcttttctcccttgagtttttctttaacgcaactcgaaggacatcaagattattgctatcccatgtta |
9838988 |
T |
|
| Q |
329 |
tggaagtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcat |
407 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9838987 |
tggaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccacgccctcat |
9838909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 49 - 406
Target Start/End: Complemental strand, 10663932 - 10663575
Alignment:
| Q |
49 |
cccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaacttttcgtt |
148 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
10663932 |
cccaatgcatgctttgaaagtaaggaccaacaatcttcatttgatagaagttctaatttatgtataggaaatgtgtgtgccacctcagcaactttttgtt |
10663833 |
T |
|
| Q |
149 |
ggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatcatccaa |
248 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
10663832 |
cgcgcgttgttataatcaccatgcttccaggttttccatcaatgaagggacttgctagttcactccaatcattataattgtcattccacagatcatcgaa |
10663733 |
T |
|
| Q |
249 |
cacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgattcaagt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||| |
|
|
| T |
10663732 |
cacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacatcaagatctttgctatcccaagttgtggaagtgacagattcaagg |
10663633 |
T |
|
| Q |
349 |
agagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttca |
406 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
10663632 |
agagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttca |
10663575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 51 - 407
Target Start/End: Complemental strand, 10184646 - 10184290
Alignment:
| Q |
51 |
caatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaacttttcgttgg |
150 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |
|
|
| T |
10184646 |
caatgcatgctttgagagtaacgaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgtgtgccacctcagctactttttcttgg |
10184547 |
T |
|
| Q |
151 |
cgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatcatccaaca |
250 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||| | |
|
|
| T |
10184546 |
cgcgttgttataatcaccatgcttccaggttttccatcaatgaagggacttactagctcatcccaatcatcataactgtcattccacagatcatccaata |
10184447 |
T |
|
| Q |
251 |
caaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgattcaagtag |
350 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| || |
|
|
| T |
10184446 |
caaacaaaaatcttttctcccttgaatgtttctttaactcaactcgaaggacatcaagattattgctatcccaagttgtggaagtgacagattcaaggag |
10184347 |
T |
|
| Q |
351 |
agacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
10184346 |
agacttggttactctcataatatcaaaatcctcggacacacaagcccacgccctcat |
10184290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 34 - 406
Target Start/End: Original strand, 10363446 - 10363818
Alignment:
| Q |
34 |
tgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacct |
133 |
Q |
| |
|
|||| ||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||| | || || |||||||||||||||| |||||||| |
|
|
| T |
10363446 |
tgaaactcatcatttcccagtgcatgctttgagagtaaagtccaacaatcttcatttgatagaagatctaatttatgtataggaaatgtgtgtgccacct |
10363545 |
T |
|
| Q |
134 |
cagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcatt |
233 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10363546 |
cagctactttttcttggcgcgttgttataatcaccatgcttccaggttttccatcaatgaaggggcttactagttcaccccaatcattataattgtcatt |
10363645 |
T |
|
| Q |
234 |
ccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaa |
333 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||| |
|
|
| T |
10363646 |
ccacagatcgtccaacacaaacaaatatcttttctccctcgagattttctttaactcaactcgaaggacatcaagattattgctttccgaagttatggaa |
10363745 |
T |
|
| Q |
334 |
gtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttca |
406 |
Q |
| |
|
||| | |||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
10363746 |
gtggcagattcaaggagagactttgttactctcataatatcaaaatcctcagagacacaaacccatgccttca |
10363818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 42 - 406
Target Start/End: Complemental strand, 10089203 - 10088839
Alignment:
| Q |
42 |
atcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaact |
141 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || || |||||||||||||||| |||||||||||| ||| |
|
|
| T |
10089203 |
atcattgcccaatgcatgctttgagagtaaagtccaacaatcttcatttgacagaagttctaatttatgtataggaaatgtgtgtgccacctcagctact |
10089104 |
T |
|
| Q |
142 |
tttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagat |
241 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
10089103 |
ttttcttggcgcgttgttataatcaccatgcttccaggttttccatcaatgaagggacttactagtgcaatccaatcattataattgtcattccacagat |
10089004 |
T |
|
| Q |
242 |
catccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccga |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||||| ||||| | |||||||| || |
|
|
| T |
10089003 |
catccaacacaaacaaaaatcttttctccctcgagtttttctttaactcaacttgaaggacaccaagatcattgctatccgaagttgtcgaagtgacaga |
10088904 |
T |
|
| Q |
342 |
ttcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttca |
406 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
10088903 |
ttcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttca |
10088839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 42 - 406
Target Start/End: Complemental strand, 10196086 - 10195722
Alignment:
| Q |
42 |
atcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaact |
141 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || || |||||||||||||||| |||||||||||| ||| |
|
|
| T |
10196086 |
atcattgcccaatgcatgctttgagagtaaagtccaacaatcttcatttgacagaagttctaatttatgtataggaaatgtgtgtgccacctcagctact |
10195987 |
T |
|
| Q |
142 |
tttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagat |
241 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
10195986 |
ttttcttggcgcgttgttataatcaccatgcttccaggttttccatcaatgaagggacttactagtgcaatccaatcattataattgtcattccacagat |
10195887 |
T |
|
| Q |
242 |
catccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccga |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||||| ||||| | |||||||| || |
|
|
| T |
10195886 |
catccaacacaaacaaaaatcttttctccctcgagtttttctttaactcaacttgaaggacaccaagatcattgctatccgaagttgtcgaagtgacaga |
10195787 |
T |
|
| Q |
342 |
ttcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttca |
406 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
10195786 |
ttcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttca |
10195722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 10581037 - 10580649
Alignment:
| Q |
19 |
gtatttgtattatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaa |
118 |
Q |
| |
|
||||||||| |||| |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| || | ||||| || || |
|
|
| T |
10581037 |
gtatttgtactatggtgaaactcatcacttcccaatgcatagtttgagagtaaagaccaacaatcttcatttgatagaggttctaaattatgtacagcaa |
10580938 |
T |
|
| Q |
119 |
atgtgcatgccacctcagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatc |
218 |
Q |
| |
|
| || ||||| || | ||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
10580937 |
acatgtgtgccatctttgtaactttttgttggcgcgttgttataatcaccatgcttccaggttttccattaatgaagggacttactagctcatcccaatc |
10580838 |
T |
|
| Q |
219 |
attataattgtcattccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgcta |
318 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
10580837 |
attacaattgtcattccacagatcatccaacacaaacaaaaatcttttctcccttgagattttctttaactcaacacgaaggacatcaagattattgctt |
10580738 |
T |
|
| Q |
319 |
tcccaagttctggaagtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcat |
407 |
Q |
| |
|
||| ||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10580737 |
tccgaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccacgccttcat |
10580649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 51 - 403
Target Start/End: Complemental strand, 10077673 - 10077321
Alignment:
| Q |
51 |
caatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaacttttcgttgg |
150 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| | ||| || | ||||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
10077673 |
caatgcatgctttgaaagtaaataccaacaatcttcatttgataaaggttctaatatatgtataggaaatgtgcgtgccacctctgcaactttttgttgg |
10077574 |
T |
|
| Q |
151 |
cgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatcatccaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
10077573 |
cgtgttgttataatcaccatgcttccatgctttccatcaatgaagggacttacaagttcatcccaatcactataattgtcattccacatatcatctaaca |
10077474 |
T |
|
| Q |
251 |
caaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgattcaagtag |
350 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||| ||||||||| || |
|
|
| T |
10077473 |
caaacaaaaatcttttatccctcgagtttttttttaactcaactcgaaggacatcaagatcattgttatcccaagttctagaagtgatcgattcaaggag |
10077374 |
T |
|
| Q |
351 |
agacttggttactctcataatatcaaaatcctcagacacacaagcccacgcct |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10077373 |
agacttggttactctcataatatcaaaatcctcagacacacaagcccatgcct |
10077321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 34 - 323
Target Start/End: Complemental strand, 10527779 - 10527490
Alignment:
| Q |
34 |
tgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacct |
133 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
10527779 |
tgaaactcatcacttcccaatgcatgctttgagagtaaagaccaacaatcttcatttgataaaagttttagtttatgtataggaaatgtgcgtgccacct |
10527680 |
T |
|
| Q |
134 |
cagcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcatt |
233 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
10527679 |
cagcaacttttcgttggtgggttgttataatcaccatacttccaggttttccatcaatgagtggacttactagctcatcccaatcattgtaattgtcatt |
10527580 |
T |
|
| Q |
234 |
ccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatccca |
323 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
10527579 |
ccatagatcatccaacacaaacaaaaatctcttctcccttgagattttctttaactgaactcgaaggatatcaagattattgctttccca |
10527490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 52 - 324
Target Start/End: Complemental strand, 10517888 - 10517616
Alignment:
| Q |
52 |
aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaacttttcgttggc |
151 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||| ||| || ||| || |||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
10517888 |
aatgcatgttttgagagtaaagaccaacaatcttcatgagatagaggttctaattcctgaataggaaatgtgtgtgccacctctgcaactttttgttggc |
10517789 |
T |
|
| Q |
152 |
gtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatcatccaacac |
251 |
Q |
| |
|
| ||||||||||||||| || || |||||||||| | ||| ||||||||||||||| ||||||||| |||| |||||||||| |||||| ||||| |
|
|
| T |
10517788 |
gcgttgttataatcaccgaactcccgggttttccatcattgagtggacttactagttcaagccaatcattgtaatcatcattccacaaatcatctaacac |
10517689 |
T |
|
| Q |
252 |
aaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaa |
324 |
Q |
| |
|
||||||||||||||||||||||||| | || || || ||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
10517688 |
aaacaaaaatcttttctccctcgagttctttttcaattcaactcgaaggatatcaagattatcgctttcccaa |
10517616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 52 - 324
Target Start/End: Original strand, 11781648 - 11781920
Alignment:
| Q |
52 |
aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaacttttcgttggc |
151 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| |||||| ||| || | |||| |||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
11781648 |
aatgcatgtttcgagagtaaagaccaacaatcttcatgagatagaggttctaatgcatgaataggaaatgtgtgtgccacctctgcaactttttgttggc |
11781747 |
T |
|
| Q |
152 |
gtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatcatccaacac |
251 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||| | ||| ||||||||||| ||| ||||||||| |||| |||||||||| |||||| ||||| |
|
|
| T |
11781748 |
gagttgttataatcaccgaacttccaggttttccatcattgagtggacttactagctcaagccaatcattgtaatcatcattccacaaatcatctaacac |
11781847 |
T |
|
| Q |
252 |
aaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaa |
324 |
Q |
| |
|
||||||||||||||||||||||||| | || || || ||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
11781848 |
aaacaaaaatcttttctccctcgagttctttttcaattcaactcgaaggatatcaagattatcgctttcccaa |
11781920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 43 - 398
Target Start/End: Original strand, 11130683 - 11131038
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||||||| |||| || || || || ||| ||||||||||| ||| ||||| ||||||| |
|
|
| T |
11130683 |
tcacttccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactt |
11130782 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| | || ||| |||||||| ||||||| ||| || ||| |||| |||||| ||||||||||||||||||||||||| || || |
|
|
| T |
11130783 |
tttgttggcgtgttgtgacgatgaccctgcttccattgtttccattaatcaaaggagttacaagttcatcccaatcattataattgtcattccataggtc |
11130882 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | ||||||| | ||||||||||| | |||||||||||| | ||||||| || |||||||| ||| |
|
|
| T |
11130883 |
atccaacacaaacaaaaatcttttgtctctcaaagttttcttcagttcaactcgaagaaaatcaagattattgttttcccaagcccttgaagtgacagat |
11130982 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||||| |||| || |||||||| | ||||||||||||||| || ||||||||||| |
|
|
| T |
11130983 |
tcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaagccca |
11131038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 43 - 398
Target Start/End: Original strand, 11159674 - 11160029
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||||||| |||| || || || || ||| ||||||||||| ||| ||||| ||||||| |
|
|
| T |
11159674 |
tcacttccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactt |
11159773 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| | || ||| |||||||| ||||||| ||| || ||| |||| |||||| ||||||||||||||||||||||||| || || |
|
|
| T |
11159774 |
tttgttggcgtgttgtgacgatgaccctgcttccactgtttccattaatcaaaggagttacaagttcatcccaatcattataattgtcattccaaaggtc |
11159873 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | ||||||||| ||||||||||| | |||||||||||| | ||||||| ||| |||||||| ||| |
|
|
| T |
11159874 |
atccaacacaaacaaaaatcttttgtcgctcaaagttttctttagttcaactcgaagaaaatcaagattattggtttcccaagctcttgaagtgacagat |
11159973 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||||| |||| || ||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
11159974 |
tcaagaagagttttagttacagataaaatatcaaaatcctcagatacacaagccca |
11160029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 43 - 398
Target Start/End: Complemental strand, 8861698 - 8861343
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||||||| |||| || || || || ||| ||||||||||| ||| ||||| ||||||| |
|
|
| T |
8861698 |
tcacttccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactt |
8861599 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| | || ||| |||||||| ||||||| ||| || ||| |||| |||||| |||| |||||||||||||||||||| || || |
|
|
| T |
8861598 |
tttgttggcgtgttgtgacgatgaccctgcttccactgtttccattaatcaaaggagttacaagttcatcccactcattataattgtcattccataggtc |
8861499 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | ||||||||| ||||||||||| | |||||||||||| | ||||||| ||| |||||||| ||| |
|
|
| T |
8861498 |
atccaacacaaacaaaaatcttttgtctctcaatgttttctttagttcaactcgaagaaaatcaagattattgttttcccaagctcttgaagtgacagat |
8861399 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||||| |||| || ||||| | ||||||||||||||| || ||||||||||| |
|
|
| T |
8861398 |
tcaagaagagttttagttacagttgaaatatcaaaatcctctgatacacaagccca |
8861343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 43 - 398
Target Start/End: Original strand, 11148511 - 11148866
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||||||| |||| || || || || ||| ||||||||||| ||| ||||| ||||||| |
|
|
| T |
11148511 |
tcacttccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactt |
11148610 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| | || ||| |||||||| ||||||| ||| || || |||| |||||| ||||||||||||||||||||||||| | || |
|
|
| T |
11148611 |
tttgttggcgtgttgtgacgatgaccctgcttccactgtttccattaatcaaaggtgttacaagttcatcccaatcattataattgtcattccataagtc |
11148710 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
|||||||||||||||||||||||| | ||| | ||||||| | ||||||||||| | |||||||||||| | ||||||| || |||||||| ||| |
|
|
| T |
11148711 |
atccaacacaaacaaaaatcttttggctctcaaagttttcttcagttcaactcgaagaaaatcaagattattgttttcccaagcccttgaagtgacagat |
11148810 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||||| |||| || |||||||| | ||||||||||||||| || ||||||||||| |
|
|
| T |
11148811 |
tcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaagccca |
11148866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 43 - 398
Target Start/End: Complemental strand, 10889718 - 10889363
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||||||| |||| || || || || || |||||| | ||| ||| ||||| ||||||| |
|
|
| T |
10889718 |
tcacttccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttgtgaataggatacgtgtgtgcaacctctgcaactt |
10889619 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| | ||||||||||| || | ||| |||||||| ||||||| ||| || ||| |||| |||||| ||||||||||||||||||||||||| || || |
|
|
| T |
10889618 |
tttgctggcgtgttgtgatgacgaccctgcttccactgtttccattaatcaaaggagttacaagttcatcccaatcattataattgtcattccataggtc |
10889519 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | ||||||||| ||||||||||| | || ||||||||| | ||||||| ||| ||||| || ||| |
|
|
| T |
10889518 |
atccaacacaaacaaaaatcttttgtctctcaaagttttctttagttcaactcgaagaaaatctagattattgttttcccaagctcttgaagtcacagat |
10889419 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||||| |||| || ||||| | | |||||||||||||||||| ||||||||||| |
|
|
| T |
10889418 |
tcaagaagagttttagttacagttaaaatatcaaaatcctcagatacacaagccca |
10889363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 43 - 398
Target Start/End: Complemental strand, 13161392 - 13161037
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||| || |||| ||||||| | | || || || |||||||| ||| ||| ||||| ||||||| |
|
|
| T |
13161392 |
tcacttccaaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactt |
13161293 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| || |||||| | ||||| | ||| || | ||| || ||| |||||| ||| |||||||||||||| | |||||||||||||| |
|
|
| T |
13161292 |
tttgttggcgtgttgtgatgatcaccctacttcccgttttgccgttaatcaatggagttactaactcatcccaatcattataactatcattccacagatc |
13161193 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
|||| ||| |||||||||||||| |||||| || |||| || |||||||||||||| |||||||||||||| || | || ||| || ||||| ||| |
|
|
| T |
13161192 |
gtccagcactaacaaaaatcttttatccctcaagtttttattcaactcaactcgaagagaatcaagattattgctttcgccagctcttgaggtgacagat |
13161093 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||| | | | || |||||||||| |||||| |||||||| || |||||| |||| |
|
|
| T |
13161092 |
tcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaaccca |
13161037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 43 - 398
Target Start/End: Complemental strand, 13333316 - 13332961
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||| || |||| ||||||| | | || || || |||||||| ||| ||| ||||| ||||||| |
|
|
| T |
13333316 |
tcacttccgaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactt |
13333217 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| || |||||| | ||||| ||| || | ||| | ||| |||||| ||| |||||||||||||||||||||||||||| || |
|
|
| T |
13333216 |
tttgttggcgtgttgtgatgatcaccctacttccttttttgccgttaatcagtggagttactaactcatcccaatcattataattgtcattccacaggtc |
13333117 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
||||||||| |||||||||||||| |||||| || |||| || || ||||||||||| | |||||||||||| | || | | ||| |||||||| ||| |
|
|
| T |
13333116 |
atccaacactaacaaaaatcttttatccctcaagtttttattcaattcaactcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagat |
13333017 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||| | | | || |||||||||| |||||| |||||||| || |||||| |||| |
|
|
| T |
13333016 |
tcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaaccca |
13332961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 43 - 398
Target Start/End: Complemental strand, 13171443 - 13171088
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||| || |||| ||||||| | | || || || |||||||| ||| ||| ||||| ||||||| |
|
|
| T |
13171443 |
tcacttccgaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactt |
13171344 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| || |||||||| ||||| | ||| || | ||| || ||| |||||| ||| |||||||||||||| | |||||||||||||| |
|
|
| T |
13171343 |
tttgttggcgtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatcattataactatcattccacagatc |
13171244 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
|||| ||| |||||||||||||| |||||| || ||| || || ||||||||||| | |||||||||||| | || | | ||| |||||||| ||| |
|
|
| T |
13171243 |
gtccagcactaacaaaaatcttttatccctcaagttttgattcaattcaactcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagat |
13171144 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||| | | | || |||||||||| |||||| |||||||| || |||||| |||| |
|
|
| T |
13171143 |
tcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaaccca |
13171088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 43 - 315
Target Start/End: Complemental strand, 13344501 - 13344229
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||| || |||| ||||||| | | || || || |||||||| ||| ||| ||||| ||||||| |
|
|
| T |
13344501 |
tcacttccgaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactt |
13344402 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| || |||||||| ||||| | ||| || | ||| || ||| |||||| ||| |||||||||||||| | |||||||||||||| |
|
|
| T |
13344401 |
tttgttggcgtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatcattataactatcattccacagatc |
13344302 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattg |
315 |
Q |
| |
|
|||| ||| |||||||||||||| |||||| || ||| || || ||||||||||| | |||||||||||| |
|
|
| T |
13344301 |
gtccagcactaacaaaaatcttttatccctcaagttttgattcaattcaactcgaagaaaatcaagattattg |
13344229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 398
Target Start/End: Complemental strand, 13290077 - 13289722
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||| || |||| ||||||| | | || || || |||||||| ||| ||| ||||| ||||||| |
|
|
| T |
13290077 |
tcacttccaaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactt |
13289978 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| || |||||| | ||||| | ||| || | ||| || ||| |||||| ||| |||||||||||||| | |||||||||||||| |
|
|
| T |
13289977 |
tttgttggcgtgttgtgatgatcaccctacttcctgttttgccgttaatcaatggagttactaactcatcccaatcattataactatcattccacagatc |
13289878 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
|||| ||| |||||||||||||| |||||| || ||| || | ||||||||||| |||||||||||||| || | | ||| |||||||| ||| |
|
|
| T |
13289877 |
gtccagcaccaacaaaaatcttttatccctcaagttttgattcagttcaactcgaagagaatcaagattattgctttcaccacctcttgaagtgacagat |
13289778 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||| | | | || |||||||||| |||||| |||||||| || |||||| |||| |
|
|
| T |
13289777 |
tcatgaatggttttagttactctcaaaatatcgaaatcctccgatacacaaaccca |
13289722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 317
Target Start/End: Complemental strand, 10500977 - 10500712
Alignment:
| Q |
52 |
aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaacttttcgttggc |
151 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| |||| |||||| ||| || || ||| ||||||||||||||||| ||||| ||||||||| ||| || |
|
|
| T |
10500977 |
aatgcatgcttcgagagtaaagtccaacaatcatcatcagatagaggttctaatttatgaataggaaatgtgcatgcgacctctgcaactttttgttcgc |
10500878 |
T |
|
| Q |
152 |
gtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatcatccaacac |
251 |
Q |
| |
|
|||||||||| ||||| ||| ||| | || || | | | |||||| ||| || ||| |||| ||| |||| |||||||||||| || |||||||| |
|
|
| T |
10500877 |
gtgttgttattatcactttgcctcctgtttctctgttagtcaagggagttattaactcatcccagtcaacataactgtcattccacatgtcgtccaacac |
10500778 |
T |
|
| Q |
252 |
aaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgct |
317 |
Q |
| |
|
||||||||||||| | ||| || | |||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
10500777 |
aaacaaaaatcttctatccatcaaatgtttcattaactcaacttgaaggatatcaagattattgct |
10500712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 352
Target Start/End: Original strand, 11153524 - 11153739
Alignment:
| Q |
136 |
gcaacttttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattcc |
235 |
Q |
| |
|
||||||||| |||||||||||| || ||||| |||||||| |||||||| ||| || ||| |||| |||||| | |||| |||||||| ||||||| |
|
|
| T |
11153524 |
gcaactttttcttggcgtgttgtgatgatcactctgcttccactttttccataaatcaatggagttacaagttcatctgaatcgttataattatcattcc |
11153623 |
T |
|
| Q |
236 |
acagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagt |
335 |
Q |
| |
|
| | ||||||||||||| |||||||||| || ||| ||||||||||||||||||||||| | |||||||| || || || | | ||| ||||| |
|
|
| T |
11153624 |
ataagtcatccaacacaacaaaaaatctttg-tctctcagaattttctttaactcaactcgaagaaaatcaagattgttactttcatatgctcttgaagt |
11153722 |
T |
|
| Q |
336 |
gaccgattcaagtagag |
352 |
Q |
| |
|
||| |||||||| |||| |
|
|
| T |
11153723 |
gacagattcaaggagag |
11153739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 10517579 - 10517521
Alignment:
| Q |
340 |
gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
|||||||| | |||||||||| |||| |||| ||||||||||||||| |||||| |||| |
|
|
| T |
10517579 |
gattcaaggatagacttggttgctctaataacatcaaaatcctcagatacacaaaccca |
10517521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 49 - 406
Target Start/End: Complemental strand, 26907303 - 26906946
Alignment:
| Q |
49 |
cccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaacttttcgtt |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||| || || ||||||||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
26907303 |
cccaatgcatgctttgagagtaaagaccaacaatcttcagttgatagaggttctaatttatgtataggaaatgtatgtgccacctctgcaactttttgtt |
26907204 |
T |
|
| Q |
149 |
ggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatcatccaa |
248 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
26907203 |
ggcgcgttgttataatcaccatgcttccaggttttccatgaatgaagggacttacaagttcttcccaatcactataattgtcgttccacaggtcatccaa |
26907104 |
T |
|
| Q |
249 |
cacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgattcaagt |
348 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26907103 |
cacaaacaaaaatcttttctcccttgagtttttccttaactcaactcgaaggacatcaagattattggtatcccaagttctggaagtgaccgattcaagg |
26907004 |
T |
|
| Q |
349 |
agagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttca |
406 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
26907003 |
agagatttggttactctcataatatcaaaatcctcagacacacaaacccatgccttca |
26906946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 43 - 398
Target Start/End: Original strand, 135545 - 135900
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||| || |||| ||||||| | | || || || |||||||| ||| ||| ||||| ||||||| |
|
|
| T |
135545 |
tcacttccgaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactt |
135644 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| || |||||||| ||||| | ||| || | ||| || ||| |||||| ||| |||||||||||||| | |||||||||||||| |
|
|
| T |
135645 |
tttgttggcgtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatcattataactatcattccacagatc |
135744 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
|||| ||| |||||||||||||| |||||| || ||| || || ||||||||||| | |||||||||||| | || | | ||| |||||||| ||| |
|
|
| T |
135745 |
gtccagcactaacaaaaatcttttatccctcaagttttgattcaattcaactcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagat |
135844 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||| | | | || |||||||||| |||||| |||||||| || |||||| |||| |
|
|
| T |
135845 |
tcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaaccca |
135900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 43 - 398
Target Start/End: Original strand, 145596 - 145951
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||| || |||| ||||||| | | || || || |||||||| ||| ||| ||||| ||||||| |
|
|
| T |
145596 |
tcacttccgaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactt |
145695 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||||||||||||| || |||||||| ||||| | ||| || | ||| || ||| |||||| ||| |||||||||||||| | |||||||||||||| |
|
|
| T |
145696 |
tttgttggcgtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatcattataactatcattccacagatc |
145795 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttctggaagtgaccgat |
342 |
Q |
| |
|
|||| ||| |||||||||||||| |||||| || ||| || || ||||||||||| | |||||||||||| | || | | ||| |||||||| ||| |
|
|
| T |
145796 |
gtccagcactaacaaaaatcttttatccctcaagttttgattcaattcaactcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagat |
145895 |
T |
|
| Q |
343 |
tcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
||| | | | || |||||||||| |||||| |||||||| || |||||| |||| |
|
|
| T |
145896 |
tcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaaccca |
145951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 153901 - 154026
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||| || |||| ||||||| | | || || || |||||||| ||| ||| ||||| ||||||| |
|
|
| T |
153901 |
tcacttccgaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactt |
154000 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcacc |
168 |
Q |
| |
|
|| ||||||||||||| || |||||| |
|
|
| T |
154001 |
tttgttggcgtgttgtgatgatcacc |
154026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 323
Target Start/End: Original strand, 17852589 - 17852860
Alignment:
| Q |
52 |
aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaacttttcgttggc |
151 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| | ||| || || ||| || |||||||||| ||| ||||| ||||||||| | ||| |
|
|
| T |
17852589 |
aatgcatgctttgagagcaaagaccaacaatcttcatcggatataggttctaatttatgaattggaaatgtgcgtgcaacctccgcaactttttttaggc |
17852688 |
T |
|
| Q |
152 |
gtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatcatccaacac |
251 |
Q |
| |
|
|||||||||| || ||| ||||||||| |||||| | || |||||| ||||||| |||| ||||||| |||||||||||||| | || |||||||| |
|
|
| T |
17852689 |
gtgttgttatgatgaccttgcttccagcttttcccttaaacaagggagttactagctcactccaatcaacgtaattgtcattccataagtcgtccaacac |
17852788 |
T |
|
| Q |
252 |
aaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatccca |
323 |
Q |
| |
|
||||||||||||| | ||| || | |||| |||| |||||||| |||| |||||||||| ||| ||||| |
|
|
| T |
17852789 |
aaacaaaaatcttctatccatcaattgtttcattaattcaactcggaggatatcaagattatcgctttccca |
17852860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 17852898 - 17852956
Alignment:
| Q |
340 |
gattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||||||| || || |||||| |||| |
|
|
| T |
17852898 |
gattcaaggagagacttggttactctcacaacatcaaaatcttctgatacacaaaccca |
17852956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 43 - 323
Target Start/End: Complemental strand, 11485450 - 11485170
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||||||||||| |||||| ||| || || ||| |||||||||| |||||| ||||| ||||||| |
|
|
| T |
11485450 |
tcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcgacctctgcaactt |
11485351 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
| || |||||||||||| |||||| ||||| ||| || ||||| ||| |||||| ||| || | |||||||| ||||||||| ||||| | || |
|
|
| T |
11485350 |
tctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatcaagataattgtcgttccatatgtc |
11485251 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatccca |
323 |
Q |
| |
|
|||||||||||||||| |||| | ||| || | ||| |||| |||||| |||||| |||||||||||||| ||||| |
|
|
| T |
11485250 |
gtccaacacaaacaaaattcttctatccttcaaatgcttcattaattcaacttgaaggatatcaagattattgctttccca |
11485170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 323
Target Start/End: Original strand, 44957354 - 44957625
Alignment:
| Q |
52 |
aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaacttttcgttggc |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||| || || ||| || ||||||||| ||| ||||| ||||| ||| ||| | |
|
|
| T |
44957354 |
aatgcatgctttgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaatcggaaatgtgtgtgcaacctctgcaacgttttgttcac |
44957453 |
T |
|
| Q |
152 |
gtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatcatccaacac |
251 |
Q |
| |
|
|||||||||| || ||| ||||| ||| | || | | ||||| ||| || ||| |||||| |||||||||||||||| | || |||||||| |
|
|
| T |
44957454 |
gtgttgttatgatgaccttgctttcagttcctcggttggtcaagggtgttattaactcagaccaatcgatataattgtcattccatatgtcgtccaacac |
44957553 |
T |
|
| Q |
252 |
aaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatccca |
323 |
Q |
| |
|
||||||||||||| | ||| || | |||| |||| |||||| |||||| |||||||||| ||| ||||| |
|
|
| T |
44957554 |
aaacaaaaatcttctatccatcaaatgtttcattaattcaacttgaaggatatcaagattatcgctttccca |
44957625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 43 - 266
Target Start/End: Original strand, 31679390 - 31679613
Alignment:
| Q |
43 |
tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt |
142 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||| |||| ||||||| ||| || || || |||||||| || | | ||| ||||||| |
|
|
| T |
31679390 |
tcacttccaaatgcatgctttgagagtaaagaccagcaatcatcatctgatagaggttctaatttatagataggaaaggtatgggtgaactcggcaactt |
31679489 |
T |
|
| Q |
143 |
ttcgttggcgtgttgttataatcaccatgcttccaggttttccatgaatgaagggacttactagttcaccccaatcattataattgtcattccacagatc |
242 |
Q |
| |
|
|| ||| |||||||| ||||||||| | ||||||| || ||||| |||||||||| | ||||| | | |||||||||||| | |||||||||| || |
|
|
| T |
31679490 |
tttattgacgtgttgtgataatcaccctacttccagattctccatcaatgaagggagtgactagatgatgccaatcattatagctatcattccacatgtc |
31679589 |
T |
|
| Q |
243 |
atccaacacaaacaaaaatctttt |
266 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
31679590 |
atccaacacaaacaaaaatctttt |
31679613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 58053 - 58126
Alignment:
| Q |
19 |
gtatttgtattatgctgaatctcatcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttga |
92 |
Q |
| |
|
||||||||| |||| |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
58053 |
gtatttgtactatggtgaaactcatcacttcccaatgcatagtttgagagtaaagaccaacaatcttcatttga |
58126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 398
Target Start/End: Complemental strand, 29836869 - 29836700
Alignment:
| Q |
229 |
tcattccacagatcatccaacacaaacaaaaatcttttctccctcgagattttctttaactcaactcgaaggacgtcaagattattgctatcccaagttc |
328 |
Q |
| |
|
|||||||| | ||||||||| |||| |||||||||||| | || | ||||||| || ||||||||||| | ||||| |||||| ||| ||| || |
|
|
| T |
29836869 |
tcattccaaacatcatccaatacaatcaaaaatcttttgttgttcaaatttttcttcaattcaactcgaagaagatcaaggttattggtattccattctc |
29836770 |
T |
|
| Q |
329 |
tggaagtgaccgattcaagtagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
398 |
Q |
| |
|
| |||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
29836769 |
ttgaagtgacaacttcaaggagagatttggttactctcaacatatcaaaatcttcagacacacaaaccca |
29836700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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