View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_42 (Length: 419)
Name: NF16561_high_42
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 43073786 - 43073380
Alignment:
| Q |
1 |
taaggtgttgtcttggaggtggttgttgggtaggctaaatgttacggcgtgtgtgatctacgagtgggaatggagtccatgggattgtttgttgagatga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43073786 |
taaggtgttgtcttggaggtggttgttgggtaggctaaatgttacggcgtgtatgttctacgagtgggaatggagtccacgggattgtttgttgagatga |
43073687 |
T |
|
| Q |
101 |
ctgatgttttcaccttgattttctgctgctattcctcctgctgtgcagattttagggtgttgtcattctcctatttctgttcggcagtgggtttgcaggc |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43073686 |
ctgatgtttttaccttgattttctgctgctattcctcctgctgtgcagattttagggtgttgtcattctcctatttctgttcggcagtgggtttgcaggc |
43073587 |
T |
|
| Q |
201 |
tgttcctgcaattgttttcgtggtatttgcgcttccggatgtggcagtggggnnnnnnnggagcttgacagttcggttctgccttcggcttggtcggctg |
300 |
Q |
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| T |
43073586 |
tgttcctgcaattgttttcgtggtatttgcgcttctagatgtggcagtggggtttttttggagcttgacagttcggttctgccttcggcttggtcggctg |
43073487 |
T |
|
| Q |
301 |
cagctgtgccaacttgctgtcagtcgggtcttgctgctgccagcaacctttgtggtgttttcagtgggtggctggggctgatgtggtagtatggggaggg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43073486 |
cagctgtgccaacttgctgtcagtcgggtcttgctgctgccagcaacctttgtggtgttttcagtgggtggctggggctgatgtggtagtatgcggaggg |
43073387 |
T |
|
| Q |
401 |
tcctttt |
407 |
Q |
| |
|
||||||| |
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| T |
43073386 |
tcctttt |
43073380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 12140122 - 12139832
Alignment:
| Q |
2 |
aaggtgttgtcttggaggtggttgttgggtaggctaaatgttacggcgtgtgtgatctacgagtgggaatggagtccatgggattgtttgttgagatgac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| | | | || ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
12140122 |
aaggtgttgtcttggaggtggttgttgggaaggctaaatgttacgacttatatgttctacgagtgggaatggagtccacaggattgtttgttgagatgac |
12140023 |
T |
|
| Q |
102 |
tgatgttttcaccttgattttctgctgctattcctcctgctgtgcagattttagggtgttgtcattctcctatttctgttcggcagtgggtttgcaggct |
201 |
Q |
| |
|
||||| ||| ||| |||| ||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| ||||||| | |
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| T |
12140022 |
tgatggttttaccatgatgttctgctgctattcctcctgctgcgcaggttttagggtgctgtcattctcctatttctgttcggcagtgggattgcaggtt |
12139923 |
T |
|
| Q |
202 |
gttcctgcaattgttttcgtggtatttgcgcttccggatgtggcagtggggnnnnnnnggagcttgacagttcggttctgccttcggcttg |
292 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| || ||||||||| |||||||||||| ||| |||||||||||||| |
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| T |
12139922 |
gttcctgcaattgttttcgtggtttttgcgcttctggaagtagcagtggggtttttttggagcttgacagcagggtgctgccttcggcttg |
12139832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 10430513 - 10430620
Alignment:
| Q |
2 |
aaggtgttgtcttggaggtggttgttgggtaggctaaatgttacggcgtgtgtgatctacgagtgggaatggagtccatgggattgtttgttgagatgac |
101 |
Q |
| |
|
||||| ||||||||||||||| |||||| || |||||||| |||| ||| || |||||||||||| |||||||| || | || ||||||||||||| |
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| T |
10430513 |
aaggttttgtcttggaggtggctgttggaaagactaaatgtctcggcttgtatgttctacgagtgggtttggagtcctcggaaatgcttgttgagatgac |
10430612 |
T |
|
| Q |
102 |
tgatgttt |
109 |
Q |
| |
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|| ||||| |
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|
| T |
10430613 |
tgctgttt |
10430620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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