View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_49 (Length: 402)
Name: NF16561_high_49
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 48 - 396
Target Start/End: Complemental strand, 28413817 - 28413469
Alignment:
| Q |
48 |
caattcaataaccatgtttctcataatccatttacaatcacttttttaattaataatccactgttttattcaaatcaaaattcaatattctacatgttcc |
147 |
Q |
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| T |
28413817 |
caattcaataaccatgtttctcataatccatttacaatcacttttttaattaataatccactgttttattcaaatcaaaattcaatattctacatgttcc |
28413718 |
T |
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| Q |
148 |
acttttcgctacttctttgtattacatgttcattcattgtagaatcgctttttggagtatatatatacgtttatgcaatgatcatcgcttaacctgttga |
247 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28413717 |
acttttcgctacttatttgtattacatgttcattcattgtagaatcgctttttggagtatatatatacgtttatgcaatgatcatcgcttaactagttga |
28413618 |
T |
|
| Q |
248 |
atatttatttttattgttagaaacgtaataatacaaatatttttagtgttttcatctaggctttgtttggataaacaacttattaagtgcttatgatata |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28413617 |
atatttatttttattgttagaaacgtaataatacaaatattcttagtgtttttatctaggctttgtttggataaacaacttattaagtgcttatgatata |
28413518 |
T |
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| Q |
348 |
agtgtttatagtagaattgattgtatatataaactacttgttcatctca |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28413517 |
agtgtttatagtagaattgattgtatatataaactacttgttcatctca |
28413469 |
T |
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