View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_55 (Length: 397)
Name: NF16561_high_55
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 32168561 - 32168931
Alignment:
| Q |
18 |
aaagatgttcaaatttaatttgttttgtaatatatggtgatggcgataaaaataaatgaattatcatcatggcttacatttgatttgtacagttagttaa |
117 |
Q |
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| T |
32168561 |
aaagatgttcaaatttaatttgttttgtaatatatggtgatggcgataaaaataaatgaattatcatcatggcttacatttgatttgtacagttagttaa |
32168660 |
T |
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| Q |
118 |
taagaaatataaggcattaaattttcctctcaaaattataatgtacattaatttcttttttgggagacattcaattttatttgaatgctattctttcgac |
217 |
Q |
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| T |
32168661 |
taagaaatataaggcattaaattttcctctcaaaattataatgtacattaatttcttttttgggagacattcaattttatttgaatgctattctttcgac |
32168760 |
T |
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| Q |
218 |
gtaaaaaatattatacgataaaacattttcatacgacatgaatgaattttcagtaaaataaagggctataaatgaatatatttggtaaagataaatcacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32168761 |
gtaaaaaatattatacgataaaacattttcatacgacatgaatgaattttcagtaaaataaagggctataaatgaatatatttggtaaagataaatcacc |
32168860 |
T |
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| Q |
318 |
atatctattaacattatatattttttaggaacattattctcttttgttaaacattaaaatcataatctctg |
388 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32168861 |
atatctattaacattatattttttttaggaacattattctcttttgttaaacattaaaatcataatctctg |
32168931 |
T |
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