View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16561_high_61 (Length: 386)
Name: NF16561_high_61
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_61 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 3842169 - 3842544
Alignment:
| Q |
1 |
gtatagatatatcttcgaaaaatgctaacaagtgtcctcttttttctaaagaacctaacaggtgtccttgttataactataattatattcctacttgtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3842169 |
gtatagatatatcttcgaaaaatgctaacaagtgtcctcttttttctaaagaagctaacaggtgtccttgttataactataattatattcctacttgtat |
3842268 |
T |
|
| Q |
101 |
taaagacattttagtatggatgaaatgaagtaatttatgggattgagaggtattcattttaccagctctnnnnnnngattcattttcctcattgcgttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| |
|
|
| T |
3842269 |
taaagacattttagtatggatgaaatgaagtaatttatgggattgagaggtattcattttaccagctctaaaaaaagattcattttcctcatttctttta |
3842368 |
T |
|
| Q |
201 |
ccttttccaaaataaagttataggcatcaccacaaatccaattcaatcccagccagggtatctcgactagtttaaacatttaaaaataaatcccatgtga |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3842369 |
ccttttccaaaataacgttataggcatcaccacaaatccaattctatcccagccagggtatctcgactagtttaaacatttaaaaataaatcccatgtga |
3842468 |
T |
|
| Q |
301 |
ttttgaagcaatgcagaaaacaatactccatgtagtccaaaataaaatgtaaatatttaactattgtatgcctttgc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3842469 |
ttttgaagcaatgcagaaaacaatactccatgtagtccaaaataaaa-gtaaatatttaactattgtatgcctttgc |
3842544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University