View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_65 (Length: 363)
Name: NF16561_high_65
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_65 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 42209995 - 42210327
Alignment:
| Q |
19 |
acaacctacattctaactatgataatttgagttcaaaatacaaaatcaaaacatgaactataagatctcgatatgtcaatttatatcaacgattgcgtga |
118 |
Q |
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| T |
42209995 |
acaacctacattc-aactatgataatttgagttcaaaatacaaaatcaaaacatgaactataagat-----tatgccaatttatatcaacgattgcgtga |
42210088 |
T |
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| Q |
119 |
ttgtgtgaatatttcaaaaccataagctacaaactgtagatgtgttcataacatgtcctgaggtaaagcatcaatgagatgatttttcaaaatttaagaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42210089 |
ttgtgtgaatatttcaaaaccataagctacaaactgtagatgtgttcataacatgtcctgagggaaagcatcaatgagatgatttttcaaaatttaagaa |
42210188 |
T |
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| Q |
219 |
aacattaaagtaaaaatggtgggggttagaggatgaatcgtataattaggctaatgcaagaattctcatatc----atataaaaataaaaatggtgtctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42210189 |
aacattaaagtaaaaatggtgggggttagaggatgaatcgtataattaggctaatgcaagaattctcatatcatatatataaaaataaaaatggtgtctt |
42210288 |
T |
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| Q |
315 |
ttgtctcttcttttgaatgttatggggtcctttgcttct |
353 |
Q |
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|||||||||||||||||||||||||||||| ||| |||| |
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| T |
42210289 |
ttgtctcttcttttgaatgttatggggtcccttgattct |
42210327 |
T |
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