View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_high_74 (Length: 333)

Name: NF16561_high_74
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_high_74
NF16561_high_74
[»] chr4 (9 HSPs)
chr4 (7-268)||(15558707-15558965)
chr4 (143-315)||(18303363-18303535)
chr4 (146-315)||(18031789-18031958)
chr4 (15-143)||(15565366-15565495)
chr4 (15-143)||(15578013-15578142)
chr4 (13-143)||(15538735-15538865)
chr4 (15-92)||(15558167-15558245)
chr4 (14-126)||(15580744-15580856)
chr4 (53-125)||(20490523-20490595)
[»] chr3 (2 HSPs)
chr3 (143-315)||(13235530-13235702)
chr3 (154-271)||(36235283-36235399)
[»] chr7 (3 HSPs)
chr7 (143-315)||(6943553-6943725)
chr7 (143-315)||(9935549-9935721)
chr7 (143-315)||(5598257-5598429)
[»] chr2 (3 HSPs)
chr2 (146-315)||(37874424-37874592)
chr2 (196-315)||(11936542-11936661)
chr2 (56-126)||(18136984-18137054)
[»] chr8 (1 HSPs)
chr8 (143-315)||(42913840-42914012)
[»] chr1 (1 HSPs)
chr1 (143-315)||(27859906-27860077)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 15558707 - 15558965
Alignment:
Q  7 tgaaatgcttttgatattcagatggtgaaattcaacgcagtttgttcaaggaagagcttcaggttccaagagatgtttgagtttgtcgttgtacatgtct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15558707 tgaaatgcttttgatattcagatggtgaaattcaacgcagtttgttcaaggaagagcttcaggttccaagagatgtttgagtttgtcgttgtacatgtct 15558806  T
Q  107 agggcgagaactttgtgaggattttcgaacgtgagctaccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaa 206  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  15558807 agggcaagaactttgagaggattttcgaacatgagctaccaaatccgatttctatttaacctgtgca---tagaagaatctcttggaaaaatcaaagaaa 15558903  T
Q  207 gaatctcttcttcctctgtaaagaattcttccaataattcttctgaacctgatcttttcaaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15558904 gaatctcttcttcctctgtaaagaattcttccaataattcttctgaacctgatcttttcaaa 15558965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 143 - 315
Target Start/End: Complemental strand, 18303535 - 18303363
Alignment:
Q  143 taccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaata 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18303535 taccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaata 18303436  T
Q  243 attcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18303435 attcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 18303363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 146 - 315
Target Start/End: Original strand, 18031789 - 18031958
Alignment:
Q  146 caaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaat-caaagaaagaatctcttcttcctctgtaaagaattcttccaataat 244  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18031789 caaatccgatt-ctatttaacctgtgcaaagtagaagaatctcttggaaaaatacaaagaaagaatctcttcttcctctgtaaagaattcttccaataat 18031887  T
Q  245 tcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 315  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18031888 tcttctgaacctgatcttttcaaaaaagcgcgtacaatacttttgtgtttacaagccaaagttttaataca 18031958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 15565495 - 15565366
Alignment:
Q  15 ttttgatattcagatggtgaaattcaacgcagtttgttcaa-ggaagagcttcaggttccaagagatgtttgagtttgtcgttgtacatgtctagggcga 113  Q
    |||||||||||| | |||||||||||| ||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||| | |||||| ||||    
T  15565495 ttttgatattcaaacggtgaaattcaatgcagtttgttccatggaagagtttcaggttccaagagttgtttgagtttgtcgttgtaaacgtctagagcga 15565396  T
Q  114 gaactttgtgaggattttcgaacgtgagct 143  Q
    |||||||||||||  |||||||| ||||||    
T  15565395 gaactttgtgaggggtttcgaacatgagct 15565366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 15578142 - 15578013
Alignment:
Q  15 ttttgatattcagatggtgaaattcaacgcagtttgttcaa-ggaagagcttcaggttccaagagatgtttgagtttgtcgttgtacatgtctagggcga 113  Q
    |||||||||||| | |||||||||||| ||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||| | |||||| ||||    
T  15578142 ttttgatattcaaacggtgaaattcaatgcagtttgttccatggaagagtttcaggttccaagagttgtttgagtttgtcgttgtaaacgtctagagcga 15578043  T
Q  114 gaactttgtgaggattttcgaacgtgagct 143  Q
    |||||||||||||  |||||||| ||||||    
T  15578042 gaactttgtgaggggtttcgaacatgagct 15578013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 15538735 - 15538865
Alignment:
Q  13 gcttttgatattcagatggtgaaattcaacgcagtttgttcaaggaagagcttcaggttccaagagatgtttgagtttgtcgttgtacatgtctagggcg 112  Q
    |||||||||||||  |  ||||||||||||| |||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||| |||||| ||     
T  15538735 gcttttgatattcgaactgtgaaattcaacgtagtttgttcatggaagagttttaggttccaagagatgtttgagtttgtccttgtacacgtctagagca 15538834  T
Q  113 agaactttgtgaggattttcgaacgtgagct 143  Q
     ||| ||| |||||  |||||||| ||||||    
T  15538835 tgaaatttatgaggggtttcgaacatgagct 15538865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 15558245 - 15558167
Alignment:
Q  15 ttttgatattcagatggtgaaattcaacgcagtttgtt-caaggaagagcttcaggttccaagagatgtttgagtttgt 92  Q
    ||||||||||||||||||||||||||| |||||||||| || ||||||| || |||||||||||||||| |||||||||    
T  15558245 ttttgatattcagatggtgaaattcaatgcagtttgttccatggaagagttttaggttccaagagatgtctgagtttgt 15558167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 15580744 - 15580856
Alignment:
Q  14 cttttgatattcagatggtgaaattcaacgcagtttgttcaaggaagagcttcaggttccaagagatgtttgagtttgtcgttgtacatgtctagggcga 113  Q
    ||||||||||||||| || || |||||| || |||  | || ||||| | |||| ||||||||||||||||||||||||||||||| | |||||| || |    
T  15580744 cttttgatattcagacggggagattcaatgcggttgttccatggaagcgtttcaagttccaagagatgtttgagtttgtcgttgtaaacgtctagagcaa 15580843  T
Q  114 gaactttgtgagg 126  Q
    |||||||| ||||    
T  15580844 gaactttgggagg 15580856  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 20490523 - 20490595
Alignment:
Q  53 caaggaagagcttcaggttccaagagatgtttgagtttgtcgttgtacatgtctagggcgagaactttgtgag 125  Q
    |||||||| | ||||||||| || || ||||||| |||||||||||| |  ||||  ||||||||||||||||    
T  20490523 caaggaagcgattcaggttctaaaaggtgtttgattttgtcgttgtaaacatctaaagcgagaactttgtgag 20490595  T

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Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 143 - 315
Target Start/End: Complemental strand, 13235702 - 13235530
Alignment:
Q  143 taccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaata 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13235702 taccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaata 13235603  T
Q  243 attcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13235602 attcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 13235530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 36235399 - 36235283
Alignment:
Q  154 atttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaataattcttctgaa 253  Q
    ||||||||||||| ||| ||||| |||||||||||||  || |||||||||||||||||||| || | |  || | ||||||||  ||||||||| ||||    
T  36235399 atttctatttaacatgtacaaagaagaagaatctcttaaaataatcaaagaaagaatctctttttacacaatata-aattcttcagataattcttttgaa 36235301  T
Q  254 cctgatcttttcaaaaaa 271  Q
    |||| || ||||||||||    
T  36235300 cctggtcatttcaaaaaa 36235283  T

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Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 143 - 315
Target Start/End: Original strand, 6943553 - 6943725
Alignment:
Q  143 taccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaata 242  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6943553 taccaaatccaatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaata 6943652  T
Q  243 attcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6943653 attcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 6943725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 143 - 315
Target Start/End: Original strand, 9935549 - 9935721
Alignment:
Q  143 taccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaata 242  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9935549 taccaaatccgatttctatttaacatgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctatgtaaagaattcttccaata 9935648  T
Q  243 attcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 315  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9935649 attcttgtgaacctgatcttttcagaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 9935721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 143 - 315
Target Start/End: Original strand, 5598257 - 5598429
Alignment:
Q  143 taccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaata 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  5598257 taccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttgtaaaaatgaaagaaagaatctcttcttcctctgtaaagaattattccaata 5598356  T
Q  243 attcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 315  Q
    |||||| ||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||    
T  5598357 attcttatgaacctgatcttttcaaaaaagtgcgtatgatacttttgtgtttacaagccaaagttttaataca 5598429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 146 - 315
Target Start/End: Original strand, 37874424 - 37874592
Alignment:
Q  146 caaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaataatt 245  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37874424 caaatccgatt-ctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaataatt 37874522  T
Q  246 cttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 315  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37874523 cttctgaacctgatcttttcaaaaaagcgcgtacaatacttttgtgtttacaagccaaagttttaataca 37874592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 196 - 315
Target Start/End: Complemental strand, 11936661 - 11936542
Alignment:
Q  196 aatcaaagaaagaatctcttcttcctctgtaaagaattcttccaataattcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgttta 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11936661 aatcaaagaaagaatctcttcttcctctgtaaagaattcttccaataattcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgttta 11936562  T
Q  296 caagccaaagttttaataca 315  Q
    ||||||||||||||||||||    
T  11936561 caagccaaagttttaataca 11936542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 18136984 - 18137054
Alignment:
Q  56 ggaagagcttcaggttccaagagatgtttgagtttgtcgttgtacatgtctagggcgagaactttgtgagg 126  Q
    ||||||| |||| | |||||||||||||||||||||| |||||| |  ||||| || ||||||||||||||    
T  18136984 ggaagagtttcaagctccaagagatgtttgagtttgttgttgtaaacatctagtgctagaactttgtgagg 18137054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 143 - 315
Target Start/End: Complemental strand, 42914012 - 42913840
Alignment:
Q  143 taccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaata 242  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42914012 taccaaatccaatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttgcaata 42913913  T
Q  243 attcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 315  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||    
T  42913912 attcttctgaacctgatcttttcaaaaaagcgcatacaaaacttttgtgtttacaaaccaaagttttaataca 42913840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 143 - 315
Target Start/End: Complemental strand, 27860077 - 27859906
Alignment:
Q  143 taccaaatccgatttctatttaacctgtgcaaagtagaagaatctcttggaaaaatcaaagaaagaatctcttcttcctctgtaaagaattcttccaata 242  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  27860077 taccaaatccgatttctatttaacatgtgcgaagtagaagaatctcttgaaaaaatcaaagaaagaatcttttcttcct-tgtaaagaattcttccaata 27859979  T
Q  243 attcttctgaacctgatcttttcaaaaaagcgcgtacagtacttttgtgtttacaagccaaagttttaataca 315  Q
    ||||||| |||  ||||||||||||||||| | ||||| ||| ||||||||||||||| ||||||||||||||    
T  27859978 attcttcagaagttgatcttttcaaaaaagtgtgtacaatacctttgtgtttacaagcaaaagttttaataca 27859906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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