View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_high_77 (Length: 326)
Name: NF16561_high_77
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_77 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 44006086 - 44006394
Alignment:
| Q |
1 |
ctgtgttagctcagctgctgctgttatttttcttgttgtttctctcttttgtattcccttttgcgtgctcttgctcatcttgtgctcaaagcttcctgtg |
100 |
Q |
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| T |
44006086 |
ctgtgttagctcagctgctgctgttatttttcttgtt---tctctcttttgtattcccttttgcgtgctcttgctcatcttgtgctcaaagcttcctgtg |
44006182 |
T |
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| Q |
101 |
attaataaattttgctaattcnnnnnnnnnnnnntgtctatagtaatcggatgtttttctttgnnnnnnnctacaaccaaatgttattatgaaagtgatc |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44006183 |
attaataaattttgctaattcaaaaaaaaaata-tgtctatagtaatcggatgtttttctttgaaaaaaactacaaccaaatgttattatgaaagtgatc |
44006281 |
T |
|
| Q |
201 |
aattgtcctgtctaaagtaacatgatgattatgtcattacggaaaaaattatttaaccaataaccatgtttatagtagccaattatcaatcaagaaaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006282 |
aattgtcctgtctaaagtaacatgatgattatgtcattacggaaaaaattatttaaccaataaccatgtttatagtagccaattatcaatcaagaaaaag |
44006381 |
T |
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| Q |
301 |
taatcaattgatg |
313 |
Q |
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||||||||||||| |
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| T |
44006382 |
taatcaattgatg |
44006394 |
T |
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