View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_high_78 (Length: 325)

Name: NF16561_high_78
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_high_78
NF16561_high_78
[»] chr8 (3 HSPs)
chr8 (111-209)||(8874701-8874799)
chr8 (236-314)||(8874578-8874656)
chr8 (14-83)||(8874829-8874898)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 8874799 - 8874701
Alignment:
Q  111 tggtgaagagtcccacaactatctgtccctgctgatagacaacaaaactgccacacaccccgccaataatgcttgggaccttacaaatcagacaaccct 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8874799 tggtgaagagtcccacaactatctgtccctgctgatagacaacaaaactgccacacaccccgccaataatgcttgggaccttacaaatcagacaaccct 8874701  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 8874656 - 8874578
Alignment:
Q  236 acacacaccttcaaatatatctcatagcttagcctagcatatctcttgcaaccccatttaagaagtttccacctttcat 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8874656 acacacaccttcaaatatatctcatagcttagcctagcatatctcttgcaaccccatttaagaagtttccacctttcat 8874578  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 8874898 - 8874829
Alignment:
Q  14 caaacaacccacacaatccacataaaacctttccaatcttttccaaagtttctttctttttcatctttca 83  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8874898 caaacaaaccacacaatccacataaaacctttccaatcttttccaaagtttctttctttttcatctttca 8874829  T

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