View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_high_79 (Length: 325)

Name: NF16561_high_79
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_high_79
NF16561_high_79
[»] chr3 (8 HSPs)
chr3 (154-310)||(13007133-13007294)
chr3 (1-76)||(48155095-48155170)
chr3 (1-50)||(13006994-13007043)
chr3 (19-76)||(29895973-29896030)
chr3 (19-58)||(11018469-11018508)
chr3 (17-76)||(54606813-54606872)
chr3 (17-73)||(7758308-7758364)
chr3 (17-73)||(49359513-49359569)
[»] chr5 (12 HSPs)
chr5 (1-76)||(13887332-13887407)
chr5 (1-76)||(25513866-25513941)
chr5 (1-75)||(8777296-8777370)
chr5 (164-228)||(13887575-13887639)
chr5 (265-310)||(13887623-13887668)
chr5 (246-290)||(8763299-8763343)
chr5 (15-68)||(21266124-21266177)
chr5 (17-69)||(26411404-26411456)
chr5 (189-227)||(8763159-8763197)
chr5 (17-73)||(10053330-10053386)
chr5 (17-73)||(22616600-22616656)
chr5 (17-73)||(36055759-36055815)
[»] chr6 (2 HSPs)
chr6 (1-76)||(25441053-25441128)
chr6 (1-76)||(4488464-4488539)
[»] chr2 (5 HSPs)
chr2 (1-76)||(32651928-32652003)
chr2 (1-76)||(40913181-40913256)
chr2 (17-75)||(6348827-6348885)
chr2 (15-72)||(7553459-7553516)
chr2 (17-74)||(58133-58190)
[»] chr4 (4 HSPs)
chr4 (1-76)||(5915677-5915752)
chr4 (17-72)||(37793491-37793546)
chr4 (1-72)||(5812658-5812729)
chr4 (17-74)||(22729818-22729875)
[»] chr1 (2 HSPs)
chr1 (17-76)||(21263927-21263986)
chr1 (17-73)||(27118437-27118493)
[»] chr7 (5 HSPs)
chr7 (17-69)||(47190166-47190218)
chr7 (246-290)||(25470322-25470366)
chr7 (189-227)||(25470468-25470506)
chr7 (17-70)||(8758397-8758450)
chr7 (246-278)||(28058374-28058406)
[»] chr8 (3 HSPs)
chr8 (17-76)||(1879108-1879167)
chr8 (17-76)||(1835267-1835326)
chr8 (17-74)||(35735864-35735921)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 154 - 310
Target Start/End: Original strand, 13007133 - 13007294
Alignment:
Q  154 atatgcatccaaattggatacgaccaattttatgcatcttcaccatcgctcaaaattccagatttcttcctccaggctttccagatttcttc-----ctc 248  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||    
T  13007133 atatgcatccaaattggatacgatcaattatatgcatcttcaccatcgctcaaaattccagatttcttcctccaggctttccagatttcttcctcagctc 13007232  T
Q  249 tgtggcgcacgcttttcagatttcttcctccagctctgtggcgagcttcggcgaaagcttct 310  Q
    |||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13007233 tgtggcgcatactttccagatttcttcctccagctctgtggcgagcttcggcgaaagcttct 13007294  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48155170 - 48155095
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48155170 tcaaattttagtgcgcattgtacatttgctcatatggtgtaccactatatttttacttgttgcaattgtgtccttg 48155095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13006994 - 13007043
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatat 50  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13006994 tcaaattttattgcgcattgtacatttgctcatatggtgtaccactatat 13007043  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 29895973 - 29896030
Alignment:
Q  19 tgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||||||||||||||| |||||||||||||||||| ||  |||| ||||| |||||||    
T  29895973 tgtacatttgctcatacggtgtaccactatattttaacccattggaattgggtccttg 29896030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 11018469 - 11018508
Alignment:
Q  19 tgtacatttgctcatatggtgtaccactatatttttactt 58  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  11018469 tgtacatttgctcatacggtgtgccactatatttttactt 11018508  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 54606813 - 54606872
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||| |||||| |||||| ||||| |  |||||||||||||||||||||||||| |||||    
T  54606813 attgcacatttactcatacggtgtgctgctatatttttacttattgcaattgtgcccttg 54606872  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 7758364 - 7758308
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcc 73  Q
    ||||||||||||| |||| ||||   || ||||| ||||||||||||||||||||||    
T  7758364 attgtacatttgcccataaggtgcgtcattatatctttacttattgcaattgtgtcc 7758308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 49359569 - 49359513
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcc 73  Q
    |||| ||||||||||||| |||||  || ||||| |||||||| |||||||||||||    
T  49359569 attgcacatttgctcataaggtgtgtcattatatctttacttaatgcaattgtgtcc 49359513  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13887332 - 13887407
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13887332 tcaaattttactgcgcattgtacatttgctcatatggtgtaccattatatttttacttattgcaattgtgtccttg 13887407  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 25513866 - 25513941
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25513866 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtctccttg 25513941  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8777370 - 8777296
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcctt 75  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8777370 tcaaattttagtgtgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcctt 8777296  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 13887575 - 13887639
Alignment:
Q  164 aaattggatacgaccaattttatgcatcttcaccatcgctcaaaattccagatttcttcctccag 228  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13887575 aaattcgatacgatcaattttatgcatcttcaccatcgctcaaaattccagatttcttcctccag 13887639  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 13887623 - 13887668
Alignment:
Q  265 cagatttcttcctccagctctgtggcgagcttcggcgaaagcttct 310  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  13887623 cagatttcttcctccagctctgcggcgagcttcggcgaaagcttct 13887668  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 8763299 - 8763343
Alignment:
Q  246 ctctgtggcgcacgcttttcagatttcttcctccagctctgtggc 290  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  8763299 ctctgtggctcacgctttccagatttcttcctccagctctgtggc 8763343  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 21266124 - 21266177
Alignment:
Q  15 gcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattg 68  Q
    |||||| ||||||||||||| |||||| || ||||| |||||||||||||||||    
T  21266124 gcattgcacatttgctcataaggtgtatcattatatctttacttattgcaattg 21266177  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 26411404 - 26411456
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgt 69  Q
    ||||||||||||||||||  || | ||||||||| ||||||||||||||||||    
T  26411404 attgtacatttgctcatacagtatgccactatatatttacttattgcaattgt 26411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 8763159 - 8763197
Alignment:
Q  189 atcttcaccatcgctcaaaattccagatttcttcctcca 227  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  8763159 atcttcaccatcgtccaaaattccagatttcttcctcca 8763197  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 10053330 - 10053386
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcc 73  Q
    |||| ||||||||||||| |||||  || ||||| ||||||||||||||||| ||||    
T  10053330 attgcacatttgctcataaggtgtgtcattatatctttacttattgcaattgagtcc 10053386  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 22616600 - 22616656
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcc 73  Q
    |||| |||||||| |||| |||||  || ||||| ||||||||||||||||||||||    
T  22616600 attggacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgtcc 22616656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 36055815 - 36055759
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcc 73  Q
    |||| ||||||||||||| |||||  || ||||| |||||||||| |||||||||||    
T  36055815 attgcacatttgctcataaggtgtgtcattatatctttacttattacaattgtgtcc 36055759  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 25441053 - 25441128
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25441053 tcaaattttagtgcgcattgtacatttgcttatatggtgtaccactatatttttacttattgcaattgtgtccttg 25441128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4488539 - 4488464
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  4488539 tcaaattttagtgcgcattgtacatttgctcatatggtgtaccactatatttttacttgttgcaattgtgttcttg 4488464  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32651928 - 32652003
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32651928 tcaaattttagtgcgcattgtacatttgctcatatggtgtaccactatatttttacttgttgcaattgtgtccttg 32652003  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 40913256 - 40913181
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40913256 tcaaattttactgtgcattgtacatttgctcatatggtgtaccactatatttttatttattgcaattgtgtccttg 40913181  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 6348827 - 6348885
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcctt 75  Q
    |||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||||    
T  6348827 attgtacatttgttcatatggtgtaccattatagttttacttattgcaattgggtcctt 6348885  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 7553459 - 7553516
Alignment:
Q  15 gcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtc 72  Q
    ||||||||| |||  |||||||||||| ||||||||||||||||||||||||||||||    
T  7553459 gcattgtacttttattcatatggtgtatcactatatttttacttattgcaattgtgtc 7553516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 58133 - 58190
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcct 74  Q
    |||| ||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||    
T  58133 attgcacatttgttcatacggtgtgccacaatatttttacttattgcaattgtgtcct 58190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5915752 - 5915677
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  5915752 tcaaattttagtgcgcattgtacatttgcttatatggtgtaccactatatttttacttgttgcaattgtgtccttg 5915677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 37793491 - 37793546
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtc 72  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37793491 attgtacatttgttcatatggtgtaccactatatttttacttattgcaattgtgtc 37793546  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5812658 - 5812729
Alignment:
Q  1 tcaaattttactgcgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtc 72  Q
    ||||||| || |||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  5812658 tcaaattatattgcgtattgtacatttgctcatatgatgtacaactttatttttacttattgcaattgtgtc 5812729  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 22729818 - 22729875
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcct 74  Q
    |||| ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||    
T  22729818 attgcacatttgctcatatggtgtgccactatatcttaacttattgcaactgtgtcct 22729875  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 21263986 - 21263927
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21263986 attgtacatttgttcatatggtgtaccactatatttttacttattgcaattgtgtccttg 21263927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 27118437 - 27118493
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcc 73  Q
    |||| ||||||| ||||| |||||  || ||||| ||||||||||||||||||||||    
T  27118437 attgcacatttgttcataaggtgtgtcattatatctttacttattgcaattgtgtcc 27118493  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 47190166 - 47190218
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgt 69  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47190166 attgtacatttgttcatatggtgtaccactatatttttacttattgcaattgt 47190218  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 25470366 - 25470322
Alignment:
Q  246 ctctgtggcgcacgcttttcagatttcttcctccagctctgtggc 290  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  25470366 ctctgtggctcacgctttccagatttcttcctccagctctgtggc 25470322  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 25470506 - 25470468
Alignment:
Q  189 atcttcaccatcgctcaaaattccagatttcttcctcca 227  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  25470506 atcttcaccatcgtccaaaattccagatttcttcctcca 25470468  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 8758397 - 8758450
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtg 70  Q
    |||| ||||||  ||||| ||||| | |||||||||||||||||||||||||||    
T  8758397 attgcacatttattcatacggtgtgctactatatttttacttattgcaattgtg 8758450  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 28058406 - 28058374
Alignment:
Q  246 ctctgtggcgcacgcttttcagatttcttcctc 278  Q
    |||||||||||||||||| ||||||||||||||    
T  28058406 ctctgtggcgcacgctttccagatttcttcctc 28058374  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 1879167 - 1879108
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  1879167 attgtacatttgttcatattgtgtaccactatatttttacttattgcaaatgtgtccttg 1879108  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 1835326 - 1835267
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtccttg 76  Q
    |||||||||||| |||||| |||||||||||||||||||||||| |||| ||||||||||    
T  1835326 attgtacatttgttcatattgtgtaccactatatttttacttatcgcaaatgtgtccttg 1835267  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 35735921 - 35735864
Alignment:
Q  17 attgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcct 74  Q
    |||| ||||||||||||| ||||| ||||||||| ||||| |||| ||||||||||||    
T  35735921 attgcacatttgctcataaggtgtgccactatatctttacctattacaattgtgtcct 35735864  T

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