View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_high_88 (Length: 303)

Name: NF16561_high_88
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_high_88
NF16561_high_88
[»] chr2 (20 HSPs)
chr2 (112-292)||(2285846-2286026)
chr2 (112-292)||(35962699-35962879)
chr2 (112-285)||(42439970-42440143)
chr2 (112-292)||(18981601-18981780)
chr2 (108-295)||(31581622-31581809)
chr2 (112-292)||(32127144-32127324)
chr2 (112-284)||(41251645-41251817)
chr2 (112-284)||(17445052-17445222)
chr2 (112-284)||(6403815-6403987)
chr2 (112-265)||(2958131-2958283)
chr2 (136-295)||(45418591-45418750)
chr2 (112-292)||(16405584-16405764)
chr2 (131-294)||(771002-771165)
chr2 (136-294)||(8147359-8147518)
chr2 (136-295)||(44084603-44084762)
chr2 (153-295)||(12756837-12756979)
chr2 (156-292)||(8059336-8059472)
chr2 (157-295)||(26162702-26162837)
chr2 (128-254)||(4555250-4555377)
chr2 (136-236)||(26237965-26238065)
[»] chr7 (19 HSPs)
chr7 (108-295)||(8394105-8394292)
chr7 (111-295)||(36630799-36630983)
chr7 (112-292)||(5555471-5555651)
chr7 (112-292)||(3114099-3114279)
chr7 (112-284)||(14777118-14777290)
chr7 (136-295)||(37002144-37002303)
chr7 (19-107)||(43245568-43245656)
chr7 (144-295)||(40920003-40920154)
chr7 (152-294)||(38638237-38638379)
chr7 (136-295)||(34389056-34389215)
chr7 (137-295)||(35090177-35090335)
chr7 (136-285)||(8867741-8867890)
chr7 (195-295)||(26624813-26624913)
chr7 (147-295)||(36658200-36658348)
chr7 (152-295)||(33685588-33685731)
chr7 (136-295)||(43184468-43184627)
chr7 (215-295)||(7002812-7002892)
chr7 (215-295)||(7048683-7048763)
chr7 (195-254)||(10868514-10868575)
[»] chr3 (17 HSPs)
chr3 (108-295)||(34084122-34084309)
chr3 (115-284)||(19390133-19390302)
chr3 (112-284)||(6269437-6269609)
chr3 (112-284)||(22968455-22968627)
chr3 (112-295)||(40081741-40081921)
chr3 (140-295)||(6930894-6931049)
chr3 (112-284)||(39771774-39771946)
chr3 (136-295)||(11018212-11018371)
chr3 (128-279)||(19565517-19565668)
chr3 (136-295)||(45182989-45183148)
chr3 (128-279)||(45335875-45336025)
chr3 (137-295)||(27935187-27935345)
chr3 (136-295)||(33040961-33041120)
chr3 (136-295)||(6503569-6503728)
chr3 (140-295)||(35514278-35514429)
chr3 (110-184)||(22922139-22922213)
chr3 (247-295)||(22922214-22922262)
[»] chr4 (33 HSPs)
chr4 (108-295)||(36382346-36382532)
chr4 (112-295)||(25930692-25930875)
chr4 (112-292)||(40528997-40529179)
chr4 (112-292)||(29319708-29319888)
chr4 (112-284)||(13012172-13012344)
chr4 (112-284)||(20129294-20129466)
chr4 (112-284)||(47500757-47500929)
chr4 (136-295)||(48989336-48989495)
chr4 (130-295)||(29995983-29996148)
chr4 (128-293)||(50205079-50205244)
chr4 (136-295)||(3292896-3293055)
chr4 (136-295)||(43143584-43143743)
chr4 (129-283)||(42333788-42333942)
chr4 (105-277)||(10352902-10353074)
chr4 (112-283)||(17511245-17511416)
chr4 (112-284)||(26439290-26439462)
chr4 (112-284)||(34407295-34407467)
chr4 (195-295)||(6235587-6235687)
chr4 (136-295)||(30216742-30216901)
chr4 (112-284)||(43355888-43356060)
chr4 (136-295)||(6690235-6690394)
chr4 (143-282)||(26448068-26448206)
chr4 (129-279)||(30077647-30077797)
chr4 (158-295)||(44156681-44156818)
chr4 (155-295)||(28877250-28877390)
chr4 (163-295)||(1817752-1817884)
chr4 (195-295)||(35546020-35546120)
chr4 (214-283)||(13392893-13392962)
chr4 (214-283)||(13396032-13396101)
chr4 (112-172)||(6235516-6235576)
chr4 (112-160)||(27363345-27363393)
chr4 (140-254)||(30109968-30110084)
chr4 (147-208)||(45194195-45194256)
[»] chr8 (13 HSPs)
chr8 (110-292)||(15838268-15838449)
chr8 (112-295)||(3648794-3648977)
chr8 (112-295)||(29728386-29728569)
chr8 (136-295)||(16788025-16788184)
chr8 (121-295)||(34136825-34136999)
chr8 (138-295)||(4404018-4404175)
chr8 (136-295)||(23402116-23402275)
chr8 (128-295)||(36408551-36408718)
chr8 (114-284)||(39914501-39914670)
chr8 (160-295)||(42230971-42231104)
chr8 (152-282)||(9877244-9877374)
chr8 (155-254)||(3435296-3435397)
chr8 (136-283)||(2729208-2729355)
[»] chr5 (21 HSPs)
chr5 (108-294)||(1776377-1776563)
chr5 (104-295)||(13817953-13818144)
chr5 (112-292)||(10033911-10034091)
chr5 (112-281)||(36293635-36293804)
chr5 (115-295)||(19985926-19986106)
chr5 (112-284)||(26283329-26283501)
chr5 (112-292)||(39657509-39657689)
chr5 (112-284)||(39434680-39434852)
chr5 (112-279)||(3155647-3155814)
chr5 (158-285)||(16333886-16334013)
chr5 (128-295)||(12278860-12279027)
chr5 (147-284)||(16155016-16155153)
chr5 (138-295)||(37254651-37254808)
chr5 (142-295)||(33430335-33430488)
chr5 (136-295)||(17332551-17332710)
chr5 (136-295)||(31680375-31680534)
chr5 (136-295)||(36291379-36291538)
chr5 (147-295)||(31501716-31501864)
chr5 (145-295)||(43068894-43069044)
chr5 (112-164)||(14316642-14316694)
chr5 (152-254)||(28801311-28801415)
[»] chr6 (7 HSPs)
chr6 (112-292)||(34948761-34948941)
chr6 (112-292)||(13837805-13837985)
chr6 (112-284)||(398601-398773)
chr6 (136-295)||(28996738-28996897)
chr6 (136-295)||(18339114-18339273)
chr6 (130-279)||(29743285-29743434)
chr6 (147-295)||(33229336-33229484)
[»] scaffold0069 (1 HSPs)
scaffold0069 (112-284)||(17826-17998)
[»] scaffold2142 (1 HSPs)
scaffold2142 (112-284)||(506-678)
[»] chr1 (11 HSPs)
chr1 (112-292)||(7433429-7433609)
chr1 (112-295)||(42310941-42311124)
chr1 (112-284)||(26144239-26144411)
chr1 (128-295)||(321377-321544)
chr1 (115-284)||(32982067-32982236)
chr1 (139-294)||(17445324-17445479)
chr1 (153-295)||(3829009-3829150)
chr1 (128-295)||(35907552-35907719)
chr1 (112-234)||(23313222-23313345)
chr1 (152-254)||(41972314-41972418)
chr1 (157-254)||(33489716-33489815)
[»] scaffold0002 (1 HSPs)
scaffold0002 (112-284)||(480468-480640)
[»] scaffold0041 (1 HSPs)
scaffold0041 (144-295)||(52941-53092)
[»] scaffold0502 (1 HSPs)
scaffold0502 (136-295)||(5238-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (140-295)||(31492-31647)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 2285846 - 2286026
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||| ||||||||||||| ||||| | | |  ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  2285846 ggcggttctaccggatggcgatctcggacggtcattcaggttcgatcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacgaa 2285945  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2285946 aggaaaaatttgagcaatctgaaaattgtcacacgcaaataggttttggaattttatttagcacactattgacgtgttcat 2286026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 35962699 - 35962879
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||| | |||||  ||||   ||||||||||||||| ||    
T  35962699 ggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaaa 35962798  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  35962799 aagaaaattttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 35962879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 112 - 285
Target Start/End: Original strand, 42439970 - 42440143
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||| | | |||  ||||  | |||||||||||||| ||    
T  42439970 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaaa 42440069  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacg 285  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  42440070 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgacg 42440143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 18981601 - 18981780
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||||||||| | |||||  |||| || ||||| |||||||| ||    
T  18981601 ggcggttctaccgtatggcgacc-cgggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaaa 18981699  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | |||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||    
T  18981700 aagaaaaatttgggcaatttaaaaattgtcacacgcaaataggtcttggaattttatttagcacactgttgacgggttcat 18981780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 295
Target Start/End: Complemental strand, 31581809 - 31581622
Alignment:
Q  108 cagtggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacattta 207  Q
    ||||||||||||||| ||||||||| | |||||||||| || | ||||| ||||| |||||||| |||| | ||| |  ||||  | |||||||||||||    
T  31581809 cagtggcggttctactgtatggcgaccacgggcggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacattta 31581710  T
Q  208 cgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  31581709 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 31581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 112 - 292
Target Start/End: Complemental strand, 32127324 - 32127144
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||| |||||||||| | |||||||||| |||| ||||||| ||||||||||||||||||| || ||  ||||    |||||||||||||| ||    
T  32127324 ggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaa 32127225  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | ||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||||    
T  32127224 aagaaaaatttaggcaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgacgggttcat 32127144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 41251817 - 41251645
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||| | | || | |||||||||| |||| ||||||||||||||||||||||||| | |||||  ||||  | |||||||||||||| ||    
T  41251817 ggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 41251718  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  41251717 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 41251645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 17445222 - 17445052
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||| |||||| |||||||||||| |||  |||||||||||||||||||||  || | |||||  ||||  | |||||||||||||| ||    
T  17445222 ggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaaa 17445125  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  17445124 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 17445052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 6403987 - 6403815
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | |||||||||| |||| ||||||||||||||||||||||||| | ||||| ||||| |  |||||||||||||  ||    
T  6403987 ggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaa 6403888  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  6403887 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 6403815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 112 - 265
Target Start/End: Complemental strand, 2958283 - 2958131
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| |||||||| | |||||  ||||  | |||||||||||||| ||    
T  2958283 ggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacatttacaaa 2958185  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattt 265  Q
      |||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  2958184 gagaaaaatttgggtaatctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 45418591 - 45418750
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||||||||||||||| ||||| || ||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||    
T  45418591 cgggcggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 45418690  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| |  |||||||||||| ||||||||||||| |||||||||    
T  45418691 attctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 45418750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 16405584 - 16405764
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||| ||||| || |  ||||||||| |||| ||| ||||||||||||||||| ||| | |||||  ||||    |||||||||||||  ||    
T  16405584 ggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacatttataaa 16405683  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | ||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||||    
T  16405684 aagaaaaatttggacaatctgaaaattgtcacacgcaaataagtcttggaattttatttagcacactattgacgggttcat 16405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 294
Target Start/End: Original strand, 771002 - 771165
Alignment:
Q  131 gatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatc 230  Q
    |||| |||||||||| |||| |||||||||||| |||||||||||| |  |||| |||||  | ||||||||| |||| ||| |||||||||||||||||    
T  771002 gatcccgggcggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaatttgggcaatc 771101  T
Q  231 tgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatct 294  Q
    |||||||| |||||||||||||||| | |||| |||||||| |||| |||||||| ||||||||    
T  771102 tgaaaattctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

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Target: chr2; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 294
Target Start/End: Original strand, 8147359 - 8147518
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctg-aa 234  Q
    |||||||||| |||| ||||||||||||| ||||||||||| |  ||||| |||| || ||||||||| |||| ||| ||||||||||||||||||| ||    
T  8147359 cgggcggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 8147458  T
Q  235 aattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatct 294  Q
    |||| |||||||||||||| | | ||||||||||||| ||||||||||||| ||||||||    
T  8147459 aattctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 44084762 - 44084603
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    ||||| |||| |||| |||||||||||||||||||||||||||  |||   |||| |  ||||||||| |||| ||| ||||||||||||||||||||||    
T  44084762 cgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatctgaaa 44084663  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| ||| |||||||||||| |  |||||||||||| ||||||||||||| |||||||||    
T  44084662 attctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctc 44084603  T

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Target: chr2; HSP #16
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 153 - 295
Target Start/End: Complemental strand, 12756979 - 12756837
Alignment:
Q  153 tcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaata 252  Q
    |||||||||||||||||| ||||| |  ||||  ||||  | ||||||||| |||| ||| |||||||||| |||||||||||||| |||||||||||||    
T  12756979 tcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaata 12756880  T
Q  253 ggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
     || | ||||||||||||| ||||||||||||| |||||||||    
T  12756879 agtctcggaattttatttagcacactattgacgggttcatctc 12756837  T

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Target: chr2; HSP #17
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 8059472 - 8059336
Alignment:
Q  156 atcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggt 255  Q
    ||||||||||||||||||||| | |||||  ||||  | ||||||||| |||| ||| ||||||||||| |||| |||||||| |||||| ||||| |||    
T  8059472 atcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaatttggccaatttgaaaattctcacacacaaatcggt 8059373  T
Q  256 tttggaattttatttatcacactattgacgtgttcat 292  Q
     | ||||||||||||| ||||| ||||||| ||||||    
T  8059372 ctcggaattttatttagcacacaattgacgggttcat 8059336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 157 - 295
Target Start/End: Complemental strand, 26162837 - 26162702
Alignment:
Q  157 tcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggtt 256  Q
    |||||||||||| |||||||||||||||  ||||| | ||||||||| |||| ||| |||||||||||||||||| |||||| ||| || |||||||||     
T  26162837 tcgataatttttacacattaaattcaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaatctaaaaattctcaaacacaaataggtc 26162738  T
Q  257 ttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | |||   ||||||| |||| |||||||| |||||||||    
T  26162737 tcgga---ttatttagcacattattgacgggttcatctc 26162702  T

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Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 4555377 - 4555250
Alignment:
Q  128 ggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggc- 226  Q
    |||||||||||||||||| | || ||||||||||||||||||||||| |||  ||||  ||||     |||||||| |||| ||| ||||| |||||||     
T  4555377 ggcgatctcgggcggtcg-ctggactcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttacaaaaagaaaattttgggca 4555279  T
Q  227 -aatctgaaaattgtcacacgcaaatagg 254  Q
     |||||||||||| ||||||| |||||||    
T  4555278 aaatctgaaaattctcacacgtaaatagg 4555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 26237965 - 26238065
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggc-aatctgaa 234  Q
    |||||||||| |||| ||||||||||| |||||||| |||| || |||   |||| || ||||||||| |||| ||| ||||||||||||| ||||||||    
T  26237965 cgggcggtcgcccgggctcgatcgata-tttttgcaaattagatgcaaaccaaaagtccattaacacacttacaaaaagaaaaatttgggcaaatctgaa 26238063  T
Q  235 aa 236  Q
    ||    
T  26238064 aa 26238065  T

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Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 108 - 295
Target Start/End: Original strand, 8394105 - 8394292
Alignment:
Q  108 cagtggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacattta 207  Q
    ||||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||    
T  8394105 cagtggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacattta 8394204  T
Q  208 cgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||| |||||    
T  8394205 caaaaggaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacgggtttatctc 8394292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 111 - 295
Target Start/End: Original strand, 36630799 - 36630983
Alignment:
Q  111 tggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacga 210  Q
    |||||||||||||||||||||| | ||| |||||| |||| ||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| |    
T  36630799 tggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa 36630898  T
Q  211 aaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||    
T  36630899 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctc 36630983  T

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Target: chr7; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 5555471 - 5555651
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||| | |||||  ||||  | |||||| ||||||| ||    
T  5555471 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaaa 5555570  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  5555571 aagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 5555651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 112 - 292
Target Start/End: Complemental strand, 3114279 - 3114099
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||||||| || | ||| |||||| |||| ||||||||||||||||||||||||| | |||||  ||||  | |||||||||||||| ||    
T  3114279 ggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 3114180  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  3114179 aagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 3114099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 14777290 - 14777118
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||| | |||||| |||||||||| |||| ||||||||||||||||||||||||| | |||||  ||||    |||||||||||||| ||    
T  14777290 ggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaa 14777191  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  14777190 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 14777118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 37002303 - 37002144
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |  |||   |||| || ||||||||| |||| ||| ||||||||||||||||||||||    
T  37002303 cgggcggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 37002204  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  37002203 attctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 37002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 43245656 - 43245568
Alignment:
Q  19 atgtagctggcatgacccgagacatttttggaactttagttacaagcggttgaattgctactgtgcgtagcagagatagagggtagata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43245656 atgtagctggcatgacccgagacatttttggaactttagttacaagcggttgaatagctactgtgcgtagcagagatagagggtagata 43245568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 295
Target Start/End: Complemental strand, 40920154 - 40920003
Alignment:
Q  144 cgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcac 243  Q
    ||||||| ||||||||||||||||||||||||| ||| |||  ||||  | |||||||||||||| ||| ||||||||||| ||||||||||||| ||||    
T  40920154 cgtccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcac 40920055  T
Q  244 acgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | |||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  40920054 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 40920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 152 - 294
Target Start/End: Complemental strand, 38638379 - 38638237
Alignment:
Q  152 ctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaat 251  Q
    |||||| |||||||||||||||||| || ||||  |||| || ||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  38638379 ctcgattgataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaat 38638280  T
Q  252 aggttttggaattttatttatcacactattgacgtgttcatct 294  Q
    |||| | ||||||||||||| ||||||||||||| ||||||||    
T  38638279 aggtctcggaattttatttagcacactattgacgggttcatct 38638237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 34389215 - 34389056
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||||||||||||||||||||| |  ||||  ||||    ||||||||| |||| ||| ||||||||||||||||||||||    
T  34389215 cgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 34389116  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| | ||||||||||||| |||| ||| |||| |||||||||    
T  34389115 attctcacacgcaaataggtctcggaattttatttagcacattatcgacgggttcatctc 34389056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 295
Target Start/End: Original strand, 35090177 - 35090335
Alignment:
Q  137 gggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaa 236  Q
    ||||||||| |||| ||||||| ||||||||||||||||| |  ||||  ||||  | ||||||||| |||| ||| |||||||||||| ||||||||||    
T  35090177 gggcggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaa 35090276  T
Q  237 ttgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    || |||||||||||||||| | ||||||||||||| |||||||||||||  ||||||||    
T  35090277 ttctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 35090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 285
Target Start/End: Complemental strand, 8867890 - 8867741
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| |||||||||||||||||||| |||| |  |||   ||||  | ||||| |||||||| ||| ||||||||||||||||| ||||    
T  8867890 cgggcggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaatttgggcaatcggaaa 8867791  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacg 285  Q
    ||| |||||||||||||||| | ||||||||||||| |||||||||||||    
T  8867790 attttcacacgcaaataggtctcggaattttatttagcacactattgacg 8867741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 26624813 - 26624913
Alignment:
Q  195 attaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatct 294  Q
    ||||||||| |||| ||| ||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||| ||||||||    
T  26624813 attaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 26624912  T
Q  295 c 295  Q
    |    
T  26624913 c 26624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 295
Target Start/End: Original strand, 36658200 - 36658348
Alignment:
Q  147 ccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacg 246  Q
    |||| ||||||||||||||||||||||||  |  ||||  ||||  | ||||||| | | || |||  |||||||||||||||||||||||| |||||||    
T  36658200 ccggactcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaaatttgggcaatctgaaaattctcacacg 36658299  T
Q  247 caaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  36658300 caaataggtctcggaattttatttagcacactattgacgggttcatctc 36658348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 152 - 295
Target Start/End: Original strand, 33685588 - 33685731
Alignment:
Q  152 ctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaat 251  Q
    |||||||||||||||||||||||||||  ||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||||| ||| ||||||||    
T  33685588 ctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcatacgcaaat 33685687  T
Q  252 aggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | || |   ||||||||||| ||||||||||||| ||| |||||    
T  33685688 atgtctcataattttatttagcacactattgacgggtttatctc 33685731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 43184627 - 43184468
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    ||||||||||  ||| ||||||||||||||||| | ||| | | | |||  ||||  | ||||||| | |||| ||| ||||||||||||||||||||||    
T  43184627 cgggcggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctgaaa 43184528  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| |  |||||||||||| ||||||||||||| |||||||||    
T  43184527 attctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 43184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 7002812 - 7002892
Alignment:
Q  215 aaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    |||||||||| |||||| |||||| ||||||||||||||||   ||||||||||||| ||||||||||||| |||||||||    
T  7002812 aaaaatttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 7048683 - 7048763
Alignment:
Q  215 aaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    |||||||||| |||||| |||||| ||||||||||||||||   ||||||||||||| ||||||||||||| |||||||||    
T  7048683 aaaaatttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 10868575 - 10868514
Alignment:
Q  195 attaacacatttacgaaaggaaaaatttgggc--aatctgaaaattgtcacacgcaaatagg 254  Q
    |||||||||||||| ||| |||||||||||||  |||||||||||| |||| ||||||||||    
T  10868575 attaacacatttacaaaaagaaaaatttgggcaaaatctgaaaattctcacgcgcaaatagg 10868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 108 - 295
Target Start/End: Complemental strand, 34084309 - 34084122
Alignment:
Q  108 cagtggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacattta 207  Q
    ||||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  34084309 cagtggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacattta 34084210  T
Q  208 cgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | ||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||    
T  34084209 caaaaagaaaaatttgggcaatatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattgatgggttcatctc 34084122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 115 - 284
Target Start/End: Original strand, 19390133 - 19390302
Alignment:
Q  115 ggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaagg 214  Q
    ||||||||||| |||||| | |||||||||||||||  |||||||||||||||||||||||| | |||||  |||| ||||||||||||||||| ||| |    
T  19390133 ggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaaaaag 19390232  T
Q  215 aaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  19390233 aaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 19390302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 6269609 - 6269437
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||| | |||||  ||||  | |||||||||||||| ||    
T  6269609 ggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 6269510  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  6269509 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 6269437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 22968627 - 22968455
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||| | |||| | ||||||||||||||| ||||||||||||||||||||||||| | | |||  ||||  | |||||||||||||| ||    
T  22968627 ggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaaa 22968528  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | |||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||| ||||||||||||    
T  22968527 aagaaaaatttgggcaatctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgac 22968455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 112 - 295
Target Start/End: Complemental strand, 40081921 - 40081741
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| ||| || ||||| |||| |||||||||||||||||| |||||| | ||||| ||||  || |||||||||||||| ||    
T  40081921 ggcggttctaccgtatggcga-ctctggaggtcgcccgggctcgatcgataatttttgaacattagactcaaccaaaagctc-attaacacatttacaaa 40081824  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | |||||||||||||||| ||||||||||||||||||||||| | |||| ||||| |||| ||||||||||||| |||||||||    
T  40081823 aagaaaaatttgggcaatttgaaaattgtcacacgcaaatagatcttgg-attttttttagcacactattgacgggttcatctc 40081741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 140 - 295
Target Start/End: Complemental strand, 6931049 - 6930894
Alignment:
Q  140 cggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattg 239  Q
    |||||| |||| ||||||||||||||||||| ||||| || ||||  ||||  | |||||||||||||| ||| ||||||||| |||||||||||||||     
T  6931049 cggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaatttaggcaatctgaaaattc 6930950  T
Q  240 tcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  6930949 tcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 6930894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 39771774 - 39771946
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | |||||||||| |||| |||| |||||||||||||||||||| | |||||  ||||  | |||||||||||||  ||    
T  39771774 ggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaa 39771873  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||  ||||||||||||    
T  39771874 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 39771946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 11018371 - 11018212
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| || | ||||||||||||||||||||||||| | |||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||    
T  11018371 cgggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 11018272  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| |  |||||||||||| ||||| ||||||| |||||||||    
T  11018271 attctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctc 11018212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 19565668 - 19565517
Alignment:
Q  128 ggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggca 227  Q
    ||||||| |||||||||| ||||  || ||||||||||||||||||||| |  |||| |||||||| |||||||||||||| ||| ||||||||||| ||    
T  19565668 ggcgatcccgggcggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaatttggaca 19565569  T
Q  228 atctgaaaattgtcacacgcaaataggttttggaattttatttatcacacta 279  Q
    ||||||||||| | |||||||||||||| | ||||||||||||| |||||||    
T  19565568 atctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 45182989 - 45183148
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||||||||||||||| ||||| |  ||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||    
T  45182989 cgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 45183088  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||| ||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  45183089 attctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctc 45183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 128 - 279
Target Start/End: Original strand, 45335875 - 45336025
Alignment:
Q  128 ggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggca 227  Q
    ||||| |||||||||||| |||| ||| ||||||||||||| ||||||| |  |||| ||||| || |||||||||||||| ||| ||||||| ||||||    
T  45335875 ggcgacctcgggcggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaagtc-attaacacatttacaaaaagaaaaatctgggca 45335973  T
Q  228 atctgaaaattgtcacacgcaaataggttttggaattttatttatcacacta 279  Q
    ||||||||||| | |||||||||||||| ||||||||||||||| |||||||    
T  45335974 atctgaaaattcttacacgcaaataggtcttggaattttatttagcacacta 45336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 295
Target Start/End: Original strand, 27935187 - 27935345
Alignment:
Q  137 gggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaa 236  Q
    |||| |||| |||| |||||||||||||||||||||||||||  ||||  ||||    ||||||||| |||| ||| |||||||||||||||||||||||    
T  27935187 gggcagtcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggcaatctgaaaa 27935286  T
Q  237 ttgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    || ||| ||| |||||||| | ||||||||||||| || |||||||||| |||||||||    
T  27935287 ttctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctc 27935345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 33040961 - 33041120
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    ||||||||||  ||| |||||| ||||||||||||| |||| |  ||||  ||||    ||||||||| |||| ||| ||||||||||  |||| |||||    
T  33040961 cgggcggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgaacaatttgaaa 33041060  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  33041061 attttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 6503728 - 6503569
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| |||||||||| ||||||||| |||| | |||||  ||||  | |||| |||| |||| ||| |||||||||  |||||||||||    
T  6503728 cgggcggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaaaaagaaaaatttaagcaatctgaaa 6503629  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| ||||| |||||||||| | ||| ||||||||| ||||| ||||| | |||||||||    
T  6503628 attctcacaggcaaataggtctcggatttttatttagcacacaattgatgggttcatctc 6503569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 35514278 - 35514429
Alignment:
Q  140 cggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattg 239  Q
    ||||||||||| |||||||||||||||| ||| | || || ||||  |||| || |||||||||    | ||| ||||||||||| |||| ||||||||     
T  35514278 cggtcgtccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacaca----caaaaagaaaaatttggacaatatgaaaattc 35514373  T
Q  240 tcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    |||| ||||||||||| | ||||||||||||  ||||||||||||| |||||||||    
T  35514374 tcactcgcaaataggtctaggaattttattttgcacactattgacgggttcatctc 35514429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 22922139 - 22922213
Alignment:
Q  110 gtggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaac 184  Q
    |||||||||| |||||||||||||| ||||||||||  ||| |||||||||| |||||||||||||||| |||||    
T  22922139 gtggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttgcacattaaactcaac 22922213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 22922214 - 22922262
Alignment:
Q  247 caaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||||||| | ||||||||||||||| ||||||||||||| |||||||||    
T  22922214 caaatagatcttggaattttatttaacacactattgacgggttcatctc 22922262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 108 - 295
Target Start/End: Complemental strand, 36382532 - 36382346
Alignment:
Q  108 cagtggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacattta 207  Q
    ||||||||||||||||||||||||| | |||||||||| |||| ||||||| ||||||||||||||||||| ||||| ||||| || |||||||||||||    
T  36382532 cagtggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacattta 36382433  T
Q  208 cgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  36382432 c-aaaagaaaaatttggacaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 36382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 112 - 295
Target Start/End: Original strand, 25930692 - 25930875
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| |  ||||||||| |||| ||||||| ||||||||||||||||||| |||||  ||||  | |||||||||||||| ||    
T  25930692 ggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaaa 25930791  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  25930792 aagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 25930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 40528997 - 40529179
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcg--gtcgtccggcctcgatcgataatttttgcacattaaattcaa-ctaaaaaatctattaacacatttac 208  Q
    ||||||||||||||||||||| |  |||||  ||||||||| ||||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||    
T  40528997 ggcggttctaccgtatggcgaccctgggcgaggtcgtccggactcgatcgataatttttgcacattaaactcaacctaaaaactc-attaacacatttac 40529095  T
Q  209 gaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
     ||| ||||||||||| |||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  40529096 aaaaagaaaaatttggacaatttgaaaattgtcacatgcaaataggtcttggaattttatttagcacactattgacgggttcat 40529179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 112 - 292
Target Start/End: Complemental strand, 29319888 - 29319708
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||||||| || | | ||||||||||| | ||||||||||||||||||||||||| | |||||  ||||  | |||||||||||||| ||    
T  29319888 ggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaaa 29319789  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | |||||||||| ||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||| ||||||    
T  29319788 aagaaaaatttgagcaatctgaaaattgtcacacacaaataagtcttggaattttatttagcacactattgacgggttcat 29319708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 13012172 - 13012344
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | |||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||    |||||||||||||  ||    
T  13012172 ggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacatttataaa 13012271  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  13012272 aagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 13012344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 20129294 - 20129466
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | |||||||||| |||| ||||||||||||||||||||||||| | |||||  ||||  | |||||||||||||| ||    
T  20129294 ggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 20129393  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||  ||||||||||||    
T  20129394 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgac 20129466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 47500757 - 47500929
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | |||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||    ||||||||||||| |||    
T  47500757 ggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttatgaa 47500856  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  47500857 aagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 47500929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 48989336 - 48989495
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||  ||||  ||||||||||||||||||||||||||  ||||| |||| || ||||||||| |||| ||| ||||||||||||||||||||||    
T  48989336 cgggcggtcaaccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaatttgggcaatctgaaa 48989435  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| ||| |||||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  48989436 attctcatacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 48989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 130 - 295
Target Start/End: Complemental strand, 29996148 - 29995983
Alignment:
Q  130 cgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaat 229  Q
    ||||| ||| ||||||||||| |||||||||||||||||| |||||| | ||||| ||||| || |||||||||||||||||| ||||||||||||||||    
T  29996148 cgatcccggacggtcgtccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaatttgggcaat 29996049  T
Q  230 ctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||||||||| |  ||||||||||| | | ||||||||||| | |||||||||||||  ||||||||    
T  29996048 ctgaaaattcttgcacgcaaatagttctcggaattttattaagcacactattgacggattcatctc 29995983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 128 - 293
Target Start/End: Complemental strand, 50205244 - 50205079
Alignment:
Q  128 ggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggca 227  Q
    ||||||| |||||||||| |||  ||||||||||||||||||||||||| || ||||  ||||  | ||||||||| |||| ||| |||||| |||| ||    
T  50205244 ggcgatcccgggcggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaaaaagaaaaaattggaca 50205145  T
Q  228 atctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatc 293  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  50205144 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 50205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 3293055 - 3292896
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||||||||||||||| ||||| |  ||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||    
T  3293055 cgggcggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 3292956  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  3292955 attctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 3292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 43143743 - 43143584
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||||||||||||||||||||| | |||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||    
T  43143743 cgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 43143644  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| | ||||||||||||| ||||| ||||| | |||||||||    
T  43143643 attctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctc 43143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 129 - 283
Target Start/End: Complemental strand, 42333942 - 42333788
Alignment:
Q  129 gcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaa 228  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||||| | |||||  ||||  | ||||||||| |||| ||| |||||||||||||||    
T  42333942 gcgatcccgggcggtcgtccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaa 42333843  T
Q  229 tctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattga 283  Q
    |||||||||| |||||||||||||||| | ||||||||||||| ||||| |||||    
T  42333842 tctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 42333788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 277
Target Start/End: Complemental strand, 10353074 - 10352902
Alignment:
Q  105 atacagtggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacat 204  Q
    |||||| |||||||  |||||  ||||| | | |||||||| |||| ||| ||||||||||||||||||||| |  |||| ||||| || ||||||||||    
T  10353074 atacaggggcggtttcaccgtccggcgacccctggcggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacat 10352975  T
Q  205 ttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacac 277  Q
    |||| ||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||||| |||||    
T  10352974 ttacaaaaggaaaaatttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacac 10352902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 283
Target Start/End: Complemental strand, 17511416 - 17511245
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | | |||||||| || | ||||||||||||||||||||||||| | |||||  ||||  | |||||||||||||| ||    
T  17511416 ggcggttctaccgtatggcgacc-ctggcggtcgcccagactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 17511318  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttgg-aattttatttatcacactattga 283  Q
    | |||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||| |||| ||||||    
T  17511317 aagaaaaatttgggcaatttgaaaattgttacacgcaaataggtcttggaaattttatttagcacattattga 17511245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 26439462 - 26439290
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | |||||||||| |||| |||| |||||||||||||||||||| | |||||  ||||  | |||||||||||||  ||    
T  26439462 ggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaa 26439363  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||  ||||||||||||    
T  26439362 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 26439290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 34407467 - 34407295
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | |||||||||| |||| |||| |||||||||||||||||||| | |||||  ||||  | |||||||||||||  ||    
T  34407467 ggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaa 34407368  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||  ||||||||||||    
T  34407367 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 34407295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 6235587 - 6235687
Alignment:
Q  195 attaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatct 294  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  6235587 attaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatct 6235686  T
Q  295 c 295  Q
    |    
T  6235687 c 6235687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 30216901 - 30216742
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||||||||||||||||||||| |  ||||  ||||    ||||||||| |||| ||| ||||||||||||||||||||||    
T  30216901 cgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 30216802  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| ||||| |||||||| | | ||||||||||||| ||||||||||||| |||||||||    
T  30216801 attctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctc 30216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 43355888 - 43356060
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | | ||| |||| |||| |||| |||||||||||||||||||| | |||||  ||||  | |||||||||||||  ||    
T  43355888 ggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaa 43355987  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||  ||||||||||||    
T  43355988 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 43356060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 6690394 - 6690235
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||||||||||||||| ||||| |  ||||  ||||  | ||||||||| |||| ||| ||||||||||||||| ||||||    
T  6690394 cgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaaactgaaa 6690295  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| | | ||||||||||| ||||||||||||| |||| ||||    
T  6690294 attctcacacgcaaataggtctcgaaattttatttagcacactattgacgggttcgtctc 6690235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 143 - 282
Target Start/End: Original strand, 26448068 - 26448206
Alignment:
Q  143 tcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtca 242  Q
    |||||||| ||||||||||||||||||||||||||||  |||  |||| || ||||||||| |||| |||  |||||||||||||||||||||||| |||    
T  26448068 tcgtccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaaaaa-aaaaatttgggcaatctgaaaattctca 26448166  T
Q  243 cacgcaaataggttttggaattttatttatcacactattg 282  Q
     || ||||||||||| ||||||||||||| ||||||||||    
T  26448167 tacacaaataggtttcggaattttatttagcacactattg 26448206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 279
Target Start/End: Complemental strand, 30077797 - 30077647
Alignment:
Q  129 gcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaa 228  Q
    |||| |||||||||||| || | ||| |||||||| |||||||||||| |  |||| ||||| |  |||||||||||||| ||| ||||||||||| |||    
T  30077797 gcgacctcgggcggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaatttggacaa 30077698  T
Q  229 tctgaaaattgtcacacgcaaataggttttggaattttatttatcacacta 279  Q
    |||||||||| | |||| ||||||||| ||| ||||||||||| |||||||    
T  30077697 tctgaaaatttttacacacaaataggtcttgaaattttatttagcacacta 30077647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 44156681 - 44156818
Alignment:
Q  158 cgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttt 257  Q
    ||||||||||||||||||| |  ||||  ||||  | ||||||||| |||| ||| ||||| ||||| ||||||||||||| || ||||||||||||| |    
T  44156681 cgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaatctgaaaattctctcacgcaaataggtct 44156780  T
Q  258 tggaattttatttatcacactattgacgtgttcatctc 295  Q
     ||||||||||||| ||||||||||||| |||||||||    
T  44156781 cggaattttatttagcacactattgacgggttcatctc 44156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 295
Target Start/End: Complemental strand, 28877390 - 28877250
Alignment:
Q  155 gatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaatagg 254  Q
    |||||||||||||||||||||| |||||||  ||||    ||||||||  |||  ||| |||||||||||| ||||| |||||| |||||||||||||||    
T  28877390 gatcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataaaaagaaaaatttgggaaatctaaaaattctcacacgcaaatagg 28877291  T
Q  255 ttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | | ||||||||||||| ||||||||||| | |||||||||    
T  28877290 tctcggaattttatttagcacactattgatgggttcatctc 28877250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 1817752 - 1817884
Alignment:
Q  163 atttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaa 262  Q
    |||||||||||||| || |||   |||| || ||||| |||||||  ||| |||||||||||||||||| |||||| | |||||||||||||| | ||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacatttataaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctcggaa 1817851  T
Q  263 ttttatttatcacactattgacgtgttcatctc 295  Q
    ||||||||| |||||||||| ||  ||||||||    
T  1817852 ttttatttaacacactattgtcggattcatctc 1817884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 35546020 - 35546120
Alignment:
Q  195 attaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatct 294  Q
    ||||||||| |||| ||| ||||| ||||||||||||||||||| |||||||||||| ||| |  |||||||||||| ||||||||||| | ||||||||    
T  35546020 attaacacacttacaaaaagaaaattttgggcaatctgaaaattctcacacgcaaatgggtctctgaattttatttagcacactattgatgggttcatct 35546119  T
Q  295 c 295  Q
    |    
T  35546120 c 35546120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 13392962 - 13392893
Alignment:
Q  214 gaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattga 283  Q
    |||||||||||||||||| |||||| |||||||||||||||| | | ||||||||||| |||||||||||    
T  13392962 gaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 13396101 - 13396032
Alignment:
Q  214 gaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattga 283  Q
    |||||||||||||||||| |||||| |||||||||||||||| | | ||||||||||| |||||||||||    
T  13396101 gaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 6235516 - 6235576
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcac 172  Q
    ||||||||||||||||||||||   |||||||||  ||| ||||| |||||||||||||||    
T  6235516 ggcggttctaccgtatggcgattctgggcggtcgctcgggctcgaccgataatttttgcac 6235576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 27363345 - 27363393
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcga 160  Q
    ||||||| ||||||||||||| |||||||||||| |||| |||||||||    
T  27363345 ggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgatcga 27363393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 30109968 - 30110084
Alignment:
Q  140 cggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggc--aatctgaaaat 237  Q
    |||||| |||| ||||||||||||||||||||||||| |  |||    |||  | ||||||||| |||| ||| ||||||||||| |  ||| ||||||     
T  30109968 cggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaaaaatttggacaaaatatgaaaaa 30110067  T
Q  238 tgtcacacgcaaatagg 254  Q
    | |||||||||||||||    
T  30110068 tctcacacgcaaatagg 30110084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 45194195 - 45194256
Alignment:
Q  147 ccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttac 208  Q
    |||| ||||||| ||||||||||||||||||| |||||  |||| || ||||||||| ||||    
T  45194195 ccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttac 45194256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 110 - 292
Target Start/End: Original strand, 15838268 - 15838449
Alignment:
Q  110 gtggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacg 209  Q
    ||||||||||||||||||||||| | |||||||||  |||| |||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||     
T  15838268 gtggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttaca 15838367  T
Q  210 aaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  15838368 aaag-aaaaatttgggcaatctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 15838449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 112 - 295
Target Start/End: Complemental strand, 3648977 - 3648794
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||||||||||||  || | |||| |||| ||||||||||||||||| ||||||| | |||||  ||||  | |||||||||||||| ||    
T  3648977 ggcggttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaa 3648878  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||    
T  3648877 aagaaaattttgggcaatctgaaaattgtcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctc 3648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 112 - 295
Target Start/End: Complemental strand, 29728569 - 29728386
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | ||| |||||| |||  |||||||||||| |||||||||||| | |||||  ||||    |||||||||||||| ||    
T  29728569 ggcggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaaa 29728470  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| ||||||||||||| |||||||||    
T  29728469 aagaaaaatttgggcaatctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctc 29728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 16788184 - 16788025
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||||||||||||||||||||| | |||||  ||||  | ||||||||| |||| ||| |||||||||||||||||| |||    
T  16788184 cgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatcttaaa 16788085  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | | |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  16788084 actctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 16788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 121 - 295
Target Start/End: Complemental strand, 34136999 - 34136825
Alignment:
Q  121 accgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaat 220  Q
    ||||| |||||| | || ||||||| |||| ||||||||||||||||||||||||| | |||||  |||| || ||||||||| |||| ||| |||||||    
T  34136999 accgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaaaaagaaaaat 34136900  T
Q  221 ttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    |||||||||||||||||| |||||||||||||||| | | ||||||||||| ||||| ||||| | |||||||||    
T  34136899 ttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattgatgggttcatctc 34136825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 138 - 295
Target Start/End: Original strand, 4404018 - 4404175
Alignment:
Q  138 ggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaat 237  Q
    |||||||| |||| ||||||||||||||||||||||||| | |||||  ||||  | ||||||| | |||| ||| |||||||||||||||||| |||||    
T  4404018 ggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctaaaaat 4404117  T
Q  238 tgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | |||||||||||||||| | ||||||||||||| ||||| ||||| | |||||||||    
T  4404118 tctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctc 4404175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 23402116 - 23402275
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||||||||| |||||| |||| |  ||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||    
T  23402116 cgggcggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 23402215  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| | | ||||||||||| ||||||||||||  |||||||||    
T  23402216 attctcacacgcaaataggtctcgaaattttatttaacacactattgactggttcatctc 23402275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 128 - 295
Target Start/End: Original strand, 36408551 - 36408718
Alignment:
Q  128 ggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggca 227  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||||| || ||||  |||| || |||||||||||||| ||| ||||| ||| ||||    
T  36408551 ggcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaatttttggca 36408650  T
Q  228 atctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    || |||||||| | |||||| ||||||| |  |||||||||||| |||||||||| ||  ||||||||    
T  36408651 atttgaaaattcttacacgctaataggtctcagaattttatttaacacactattgccggattcatctc 36408718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 114 - 284
Target Start/End: Original strand, 39914501 - 39914670
Alignment:
Q  114 cggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaag 213  Q
    |||||| ||||| | |||| | |||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||    |||||||||||||  |||     
T  39914501 cggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaa 39914600  T
Q  214 gaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
     ||||||||||||||| |||||||||||||| | |||||||| ||||||||||||||  ||||||||||||    
T  39914601 -aaaaatttgggcaatttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgac 39914670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 42230971 - 42231104
Alignment:
Q  160 ataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttg 259  Q
    |||||||||||||||||||| ||||| |||| || ||||||||  |||| ||| |||||||||||||||| |||||||| ||| | |||||||||| |      
T  42230971 ataatttttgcacattaaatccaactcaaaagtccattaacac--ttacaaaaagaaaaatttgggcaatttgaaaattctcatatgcaaataggtctca 42231068  T
Q  260 gaattttatttatcacactattgacgtgttcatctc 295  Q
    |||||||||||| |||||||||||||  ||||||||    
T  42231069 gaattttatttagcacactattgacggattcatctc 42231104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 152 - 282
Target Start/End: Original strand, 9877244 - 9877374
Alignment:
Q  152 ctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaat 251  Q
    |||||| |||||||||||||||||| |   |||  |||| || ||||||||| |||| ||| ||||||||||||||||||||||||| ||||| ||||||    
T  9877244 ctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaaat 9877343  T
Q  252 aggttttggaattttatttatcacactattg 282  Q
    |||| | | ||||||||||| ||||||||||    
T  9877344 aggtctcgaaattttatttagcacactattg 9877374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 3435296 - 3435397
Alignment:
Q  155 gatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggc--aatctgaaaattgtcacacgcaaata 252  Q
    |||||||||||||||||||||| |  ||||  ||||| | ||||||||| |||| ||| |||||||||||||  |||||||||||| ||| |||||||||    
T  3435296 gatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaaaatctgaaaattctcaaacgcaaata 3435395  T
Q  253 gg 254  Q
    ||    
T  3435396 gg 3435397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 283
Target Start/End: Complemental strand, 2729355 - 2729208
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    ||||||| || |||| ||||||||||||||||| |||||||||| |||   ||||  | ||||||||| |||  ||| ||||  ||| |||||| |||||    
T  2729355 cgggcggacgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttataaaaagaaattttttggcaatttgaaa 2729256  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattga 283  Q
    | | ||| |||||||||||| |   ||||||||||| |||||||||||    
T  2729255 actctcatacgcaaataggtctcaaaattttatttagcacactattga 2729208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 108 - 294
Target Start/End: Complemental strand, 1776563 - 1776377
Alignment:
Q  108 cagtggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacattta 207  Q
    ||||||||||||||||||||| ||| | |||||||||| |||| |||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||    
T  1776563 cagtggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacattta 1776464  T
Q  208 cgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatct 294  Q
    | ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| |||  ||||||||    
T  1776463 caaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacaggttcatct 1776377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 104 - 295
Target Start/End: Original strand, 13817953 - 13818144
Alignment:
Q  104 gatacagtggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacaca 203  Q
    ||||||| ||||||||||||||||||||| | ||||||||||  ||| ||||||||||||||||||||||||| | |||||  ||||  | |||||||||    
T  13817953 gatacaggggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacaca 13818052  T
Q  204 tttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| | |||||||    
T  13818053 tttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgacgggctcatctc 13818144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 10033911 - 10034091
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | ||| || ||| |||| ||||||||||||||||||||||||| | |||||  ||||  | |||||||||||||| ||    
T  10033911 ggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 10034010  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  10034011 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 10034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 112 - 281
Target Start/End: Complemental strand, 36293804 - 36293635
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||| |||||| | || |||||||||||| |||||||||||||||||| |||||| | |||||  ||||  | |||||||||||||| ||    
T  36293804 ggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaaa 36293705  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactatt 281  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||    
T  36293704 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatt 36293635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 115 - 295
Target Start/End: Original strand, 19985926 - 19986106
Alignment:
Q  115 ggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaagg 214  Q
    |||| ||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||| |||||||  |||| || |||| ||||||||| ||| |    
T  19985926 ggttttaccgtatgacgacctcgggcggtcgtccgagctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaag 19986025  T
Q  215 aaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||||||||||| ||||| |||||| |||||||||||||||| ||| ||||||||||| ||||||||||||  |||||||||    
T  19986026 aaaaatttgggtaatctaaaaattatcacacgcaaataggtcttgaaattttatttaacacactattgacaggttcatctc 19986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 26283501 - 26283329
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| |||||||||||| |||| ||||||||||||||||||||||||| | ||||| ||||| |  |||||||||||||  ||    
T  26283501 ggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaa 26283402  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  26283401 aagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 26283329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 292
Target Start/End: Complemental strand, 39657689 - 39657509
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||  |||||||| | | | ||||||| ||| |||||| |||||||||||||||||| | |||||  ||||    |||||||||||||| ||    
T  39657689 ggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaa 39657590  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  39657589 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 39657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 39434680 - 39434852
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||| |||||| |  ||||||||| |||| ||||||||||||||||| ||||||| | |||||  ||||  | |||||||||||||| ||    
T  39434680 ggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaa 39434779  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||| | |||||||| || |||||||||||| ||||||||||||    
T  39434780 atgaaaaatttgggcaatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgac 39434852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 3155814 - 3155647
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||| |||||||||||| ||||||||||  ||| ||||||| ||||||||||||||||  | |||||  |||| || |||||||||||||  ||    
T  3155814 ggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacatttataaa 3155715  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacacta 279  Q
    | ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  3155714 aagaaaaatttggacaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 158 - 285
Target Start/End: Complemental strand, 16334013 - 16333886
Alignment:
Q  158 cgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttt 257  Q
    ||||||||||||||||||| |||||||  ||||  | |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtct 16333914  T
Q  258 tggaattttatttatcacactattgacg 285  Q
    |||||||||||||| |||||||||||||    
T  16333913 tggaattttatttagcacactattgacg 16333886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 128 - 295
Target Start/End: Complemental strand, 12279027 - 12278860
Alignment:
Q  128 ggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggca 227  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||||||| |  ||||  |||   | ||||||||| |||| ||| ||||||||||||||    
T  12279027 ggcgatcccgggcggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaatttgggca 12278928  T
Q  228 atctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||  |||||||||    
T  12278927 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacaggttcatctc 12278860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 16155016 - 16155153
Alignment:
Q  147 ccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacg 246  Q
    |||| ||||||||||||||||||||||||| | |||||  ||||  | |||||||||||||  ||| ||||||||| |||||||||||||||||||||||    
T  16155016 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacacg 16155115  T
Q  247 caaataggttttggaattttatttatcacactattgac 284  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  16155116 caaataggtcttggaattttatttagcacactattgac 16155153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 295
Target Start/End: Original strand, 37254651 - 37254808
Alignment:
Q  138 ggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaat 237  Q
    |||||||| || | ||||||||||||||||||||||||| |  ||||  |||| || ||||||||| |||| ||| ||||||||||||||||||||||||    
T  37254651 ggcggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaat 37254750  T
Q  238 tgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | |||||||||||||||| | ||||||||||||| |||| |||||||| |||||||||    
T  37254751 tctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctc 37254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 142 - 295
Target Start/End: Original strand, 33430335 - 33430488
Alignment:
Q  142 gtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtc 241  Q
    |||| |||| ||||||||||||||||||| ||||| |  ||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||||| ||    
T  33430335 gtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctc 33430434  T
Q  242 acacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    |||||||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  33430435 acacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 17332710 - 17332551
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||| ||| |||| |||||||||||||||||||| |||| |  ||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||    
T  17332710 cgggcgttcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 17332611  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| | ||||||||||||| |||||||||||||  ||||||||    
T  17332610 attttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 17332551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 31680375 - 31680534
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||||||||||||| | ||||| |  ||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||    
T  31680375 cgggcggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 31680474  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| ||||| |||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  31680475 attctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 31680534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 36291379 - 36291538
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||||||||  |||||| ||||||||||||||||| ||  |||  |||| |  |||||||||||||| ||| |||||||||||||||||| |||    
T  36291379 cgggcggtcgtccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaaaaagaaaaatttgggcaatctcaaa 36291478  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| | |||| ||||||||| |  |||||||||||| ||||||||||||| |||||||||    
T  36291479 attattacacacaaataggtctcagaattttatttaacacactattgacgggttcatctc 36291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 147 - 295
Target Start/End: Complemental strand, 31501864 - 31501716
Alignment:
Q  147 ccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacg 246  Q
    |||| ||||||||||||||||||||||||| |  ||||  ||||  | ||||||||| |||| ||| ||||||||||||||||||||||||| || ||||    
T  31501864 ccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcgcacg 31501765  T
Q  247 caaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||||||||| | | ||||||||||| ||||||||||| | |||||||||    
T  31501764 caaataggtctcgaaattttatttagcacactattgatgagttcatctc 31501716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 295
Target Start/End: Original strand, 43068894 - 43069044
Alignment:
Q  145 gtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcaca 244  Q
    |||||| ||||||| ||||||||| ||||||| |  ||||  |||| || |||||||||||||| ||| ||||||||||||||||||||||||| | |||    
T  43068894 gtccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttaca 43068993  T
Q  245 cgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
     | ||||| || | ||||||||||||| |||||||||| ||  ||||||||    
T  43068994 tgtaaataagtctcggaattttatttagcacactattgccggattcatctc 43069044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 14316642 - 14316694
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataat 164  Q
    |||||||||||||||||||||||||||||||||| || | |||||||||||||    
T  14316642 ggcggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 28801311 - 28801415
Alignment:
Q  152 ctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttggg--caatctgaaaattgtcacacgcaa 249  Q
    ||||||||||||||||||||||||| || |||   ||||  | ||||||||| |||| ||| ||||||||||||   ||| |||||||| ||||||||||    
T  28801311 ctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaatttgggaaaaatatgaaaattctcacacgcaa 28801410  T
Q  250 atagg 254  Q
    |||||    
T  28801411 atagg 28801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 112 - 292
Target Start/End: Complemental strand, 34948941 - 34948761
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | | |||||||| || | ||||||||||||||||||||||||| | |||||  ||||  | |||||||||||||| ||    
T  34948941 ggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 34948842  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | |||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||| ||||||||||||| ||||||    
T  34948841 aagaaaaatttgggcaatctgaaaattgtcacacacaaatagatcttgaaattttatttagcacactattgacgggttcat 34948761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 13837805 - 13837985
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | |||||| |||  |||  ||||||||||||||||| |||||| | |||||  ||||    || ||||||||||| ||    
T  13837805 ggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaaa 13837904  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  13837905 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 13837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 398601 - 398773
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | |||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||    |||||||||||||  ||    
T  398601 ggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaa 398700  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  398701 aagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 398773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 28996738 - 28996897
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||  ||||||||||||||||||| ||||| |  ||||  |||| || ||||||||| |||| ||| ||||||||||||||||||||||    
T  28996738 cgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 28996837  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| |||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  28996838 attctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 28996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 18339114 - 18339273
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||| ||||||||||||||||| |  |||   ||||  | ||||||||| |||| ||| ||||| ||||||||||||||||    
T  18339114 cgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaa 18339213  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| ||||| |||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  18339214 attctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 18339273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 279
Target Start/End: Original strand, 29743285 - 29743434
Alignment:
Q  130 cgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaat 229  Q
    ||||| |||||||| | |||| ||| ||||||||||||||||||||| |  |||| ||||| |  ||||||||||||||  || ||||||||||||||||    
T  29743285 cgatcccgggcggttgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaatttgggcaat 29743384  T
Q  230 ctgaaaattgtcacacgcaaataggttttggaattttatttatcacacta 279  Q
    ||||||||| | |||||||||||||| | ||||||||||||| |||||||    
T  29743385 ctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 29743434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 295
Target Start/End: Complemental strand, 33229484 - 33229336
Alignment:
Q  147 ccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacg 246  Q
    |||| |||||||||| ||||||| |||||| |  ||||  |||| || |||||||||||| | ||| ||||||||||||||||||||||||| | |||||    
T  33229484 ccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaatctgaaaattcttacacg 33229385  T
Q  247 caaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
     ||||| || | || |||||||||| |||||||||| ||  ||||||||    
T  33229384 taaataagtctcgggattttatttagcacactattgccggattcatctc 33229336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 17826 - 17998
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||||||||| |||||| | || ||| |||||||| ||||||||||||||||||||||||| | |||||  ||||  | |||||||||||||| ||    
T  17826 ggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 17925  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | ||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||| ||||||||||||    
T  17926 aagaaaaatttgggcaatctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacactattgac 17998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 506 - 678
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||||| |||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||    |||||||||||||  ||    
T  506 ggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaa 605  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  606 aagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 7433429 - 7433609
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||| | | |||||||||| |||  ||||||| ||||||||||||||||| | |||||  ||||  | |||||||||||||| ||    
T  7433429 ggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 7433528  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcat 292  Q
    | ||||| |||||||||||| ||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||| ||||||    
T  7433529 aagaaaattttgggcaatctaaaaattgtcacacacaaataggtcttgaaattttatttagcacactattgacgggttcat 7433609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 112 - 295
Target Start/End: Complemental strand, 42311124 - 42310941
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    ||||||||||||||||||||| | | | || ||| |||| ||||||||||||||||||||||||| | |||||  ||||  |  ||||||||||||| ||    
T  42311124 ggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaaa 42311025  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | ||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||  || ||||||||| |||||||||    
T  42311024 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctc 42310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 26144239 - 26144411
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | |||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||    |||||||||||||  ||    
T  26144239 ggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaa 26144338  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  26144339 aagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 26144411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 128 - 295
Target Start/End: Complemental strand, 321544 - 321377
Alignment:
Q  128 ggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggca 227  Q
    |||||| |||||||||||||||| ||||||||||||||||||  ||||| || ||||  |||| || ||||||||| |||| ||| ||||||||||||||    
T  321544 ggcgatttcgggcggtcgtccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaagaaaaatttgggca 321445  T
Q  228 atctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||||||||||| ||| | |||||||||| | ||||||||||||| |||| |||||||| |||||||||    
T  321444 atctgaaaattctcatatgcaaataggtctcggaattttatttaacacattattgacgggttcatctc 321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 115 - 284
Target Start/End: Complemental strand, 32982236 - 32982067
Alignment:
Q  115 ggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaagg 214  Q
    |||||||||||||||||| | ||||||||||  ||| | ||||||||||||||||||||||| |  ||||  ||||  | ||||||| |||||| ||| |    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaag 32982137  T
Q  215 aaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||    
T  32982136 aaaaatttggacaatctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgac 32982067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 139 - 294
Target Start/End: Original strand, 17445324 - 17445479
Alignment:
Q  139 gcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaatt 238  Q
    ||||||| |||| || |||| |||||||||| |||||| || ||||  |||| || ||||||||| |||| ||| |||||||||||||||||||||||||    
T  17445324 gcggtcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaatt 17445423  T
Q  239 gtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatct 294  Q
     |||||||||||||||| | ||||||||||||| |||| |||||||| ||||||||    
T  17445424 ctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 3829009 - 3829150
Alignment:
Q  153 tcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcacacgcaaata 252  Q
    ||||||||||||||||||||||||||  ||||  |||| |  ||||||||| |||| ||| ||||||||||||||||||||||||| ||| |||||||||    
T  3829009 tcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattttcatacgcaaata 3829108  T
Q  253 ggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    || | |||||||||||||| ||||||||||||| |||||||||    
T  3829109 gg-tctggaattttatttagcacactattgacgggttcatctc 3829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 295
Target Start/End: Original strand, 35907552 - 35907719
Alignment:
Q  128 ggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggca 227  Q
    ||||| |||||||||||| |||| || |||||||||||||||||||||| |  ||||  ||||  | ||||  ||| |||| ||| ||||| |||||| |    
T  35907552 ggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaaaaagaaaattttgggta 35907651  T
Q  228 atctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||||||||||| |||||||||||||||| | ||||||||||||| |||| |||||||| |||||||||    
T  35907652 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgagttcatctc 35907719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 23313222 - 23313345
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataattt-ttgcacattaaattcaactaaaaaatctattaacacatttacga 210  Q
    |||||||||||||||||||||||||||||||| | |||| |||||| ||| |||| |||||||||| | |||||  |||| |  |||||||||||||| |    
T  23313222 ggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacatttacaa 23313321  T
Q  211 aaggaaaaatttgggcaatctgaa 234  Q
    || |||||||||||||||||||||    
T  23313322 aaagaaaaatttgggcaatctgaa 23313345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 41972418 - 41972314
Alignment:
Q  152 ctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgg--gcaatctgaaaattgtcacacgcaa 249  Q
    ||||||||||||||||||||||||| || ||||  ||||  ||||||||||| |||| ||| |||||||||||    |||||||||||| ||||||||||    
T  41972418 ctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttacaaaaagaaaaatttggaaaaaatctgaaaattctcacacgcaa 41972319  T
Q  250 atagg 254  Q
    |||||    
T  41972318 atagg 41972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 33489716 - 33489815
Alignment:
Q  157 tcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaa--tctgaaaattgtcacacgcaaatagg 254  Q
    ||||||||||||| |||||| | ||||   ||||  | ||||||||| |||| ||| |||||||||| ||||  |||||||||| |||||||||||||||    
T  33489716 tcgataatttttgtacattagactcaaactaaaagcccattaacacacttactaaaagaaaaatttgagcaaaatctgaaaattctcacacgcaaatagg 33489815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 480640 - 480468
Alignment:
Q  112 ggcggttctaccgtatggcgatctcgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaa 211  Q
    |||||||| ||||| | |||| | |||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||    |||||||||||||  ||    
T  480640 ggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaa 480541  T
Q  212 aggaaaaatttgggcaatctgaaaattgtcacacgcaaataggttttggaattttatttatcacactattgac 284  Q
    | |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  480540 aagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 480468  T

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Target: scaffold0041 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 295
Target Start/End: Original strand, 52941 - 53092
Alignment:
Q  144 cgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattgtcac 243  Q
    ||||||| ||||||||||||||||||||||||| ||| |||  ||||  | |||||||||||||| ||| ||||||||||| ||||||||||||| ||||    
T  52941 cgtccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcac 53040  T
Q  244 acgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    | |||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  53041 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 53092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 5238 - 5397
Alignment:
Q  136 cgggcggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaa 235  Q
    |||||||||| |||| ||||||| ||||||||||||||||| |  |||   ||||  | ||||||||| |||| ||| ||||| ||||||||||||||||    
T  5238 cgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaa 5337  T
Q  236 attgtcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    ||| ||||| |||||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  5338 attctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 5397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 31492 - 31647
Alignment:
Q  140 cggtcgtccggcctcgatcgataatttttgcacattaaattcaactaaaaaatctattaacacatttacgaaaggaaaaatttgggcaatctgaaaattg 239  Q
    |||||| |||| |||||||||||||||||||||| || |  ||||  ||||  | ||||||||| |||| ||| ||||||||||| |||||||||||||     
T  31492 cggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaatttggacaatctgaaaattc 31591  T
Q  240 tcacacgcaaataggttttggaattttatttatcacactattgacgtgttcatctc 295  Q
    |||| ||||||||||| | | ||||||||||  ||||||||||||  |||||||||    
T  31592 tcactcgcaaataggtctagtaattttattttgcacactattgacaggttcatctc 31647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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