View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16561_high_93 (Length: 292)
Name: NF16561_high_93
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_high_93 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 39751275 - 39751532
Alignment:
| Q |
16 |
atgaaatagatacgagtgttgtaccaccgcttatatacgctgtaatgggaacatcaagagaaatagcaattggtcctgtggccgtggtttcgttgctgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39751275 |
atgaaatagatacgagtgttgtaccaccgcttatatacgctgtaatgggaacatcaagagaaatagcaattggtcctgtggccgtggtttcgttgctgtt |
39751374 |
T |
|
| Q |
116 |
atcatcgatggttcaaaaattagtagacccttctactgatccaattggttatacaaagctcatttttcttgccacactctttgctggtatctttcaaact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39751375 |
atcatcgatggttcaaaaattagtagacccttctactgatccaattggttatacaaagctcatttttcttgccacactctttgctggtatctttcaaact |
39751474 |
T |
|
| Q |
216 |
tcatttggattattcaggtgaaaattatcttcttgtactaactaataactatgtctat |
273 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39751475 |
tcatttggactattcaggtgaaaattatcttcttgtactaactaataactatgtctat |
39751532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University