View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16561_low_10 (Length: 640)
Name: NF16561_low_10
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 18 - 629
Target Start/End: Original strand, 46348905 - 46349516
Alignment:
| Q |
18 |
acaatctgatggatcaaagtataatcactggggaaattcataaaatcagtggagatcggtgatttcggcctagtaatggtggactgaagtagaatcaccg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
46348905 |
acaatctgatggatcaaagtataatcactggggaaattcataaaatcagtggagatcggtgatttcggcctagtaatggtggactaaagtagaatcacag |
46349004 |
T |
|
| Q |
118 |
agggcataaaatcagtgggatcgatattgcaacctagtattattctgggccccacaatcaattttgcactcaaagctcacttgtttcacagctcatcaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46349005 |
agggcataaaatcagtgggatcgatattgcaacctagtattattctgggccccacaatcaattttgcactcaaagctcacttgtttcacagttcatcaaa |
46349104 |
T |
|
| Q |
218 |
ataacaaatcaagagtttaaaatggccagaccgtcggcgtaaaatagttatacactagcatccaatgaggccaccatttttccatgacacactgtcagtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46349105 |
ataacaaatcaagagtttaaaatggccagactgtcggcgtaaaatagttatacactagcatccaatgaggccaccatttttccatgacacactgtcagtt |
46349204 |
T |
|
| Q |
318 |
taaaaataaccatacaatgttggggtgatgtggcactggcaaagtagtggattgtcagtgtaactgttttactattccagacctctcttccatgaagaaa |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46349205 |
taaaaataaccatacaaagttggggtgatgtggcactggcaaagtagtggattgtcagtgtaactgttttactattccagacctctcttccatgaagaaa |
46349304 |
T |
|
| Q |
418 |
agcctcagacagacttgacaagcaacaaaacttgtccatgatataccaagcaggaaagcaaaattttaaattgtagtcgcagtcccagatgcaattatgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46349305 |
agcctcagacagacttgacaagcaacaaaacttgtccatgatataccaagcaggaaagcaaagttttaaattgtagtcgcagtcccagatgcaattatgt |
46349404 |
T |
|
| Q |
518 |
catgttcgttgaaactgcagacaaatgtggcagatctagccgcaactgcagttgcaaagactcgaaacaccttggcaccatgatcgcaaaattacagttg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46349405 |
catgttcgttgaaactgcagacaaatgtggcagatctagccgcaactgcagttgcaaagactcgaaacaccttggcaccatgaccgcaaaattacagttg |
46349504 |
T |
|
| Q |
618 |
cacactagtatt |
629 |
Q |
| |
|
|||||||||||| |
|
|
| T |
46349505 |
cacactagtatt |
46349516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 387 - 541
Target Start/End: Original strand, 46357536 - 46357688
Alignment:
| Q |
387 |
tactattccagacctctcttccatgaagaaaagcctcagacagacttgacaagcaacaaaacttgtccatgatataccaagcaggaaagcaaaattttaa |
486 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||||| | ||| ||||| ||||||||||| ||||| | | |||| |
|
|
| T |
46357536 |
tactattccagccctcttttacatgaagagaagcctcagacagacttgataagcaacagagtttgcccatggtataccaagcataaaagc--agtcttaa |
46357633 |
T |
|
| Q |
487 |
attgtagtcgcagtcccagatgcaattatgtcatgttcgttgaaactgcagacaa |
541 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||| || ||||||||||| |||| |
|
|
| T |
46357634 |
attgtagtcacagtcgtggatgcaattaagtcataatctttgaaactgcatacaa |
46357688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 32316084 - 32316148
Alignment:
| Q |
288 |
ccaccatttttccatgacacactgtcagtttaaaaataaccatacaatgttggggtgatgtggca |
352 |
Q |
| |
|
|||| ||||||||||| |||||| || |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
32316084 |
ccactatttttccatgtcacactatctgtttcaaaataaccatacaaaagtggggtgatgtggca |
32316148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 40918828 - 40918777
Alignment:
| Q |
284 |
gaggccaccatttttccatgacacactgtcag-tttaaaaataaccatacaa |
334 |
Q |
| |
|
||||| |||||||||||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
40918828 |
gaggctaccatttttccatgtcacactgtcggatttaaaaataaccatacaa |
40918777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 32879193 - 32879113
Alignment:
| Q |
256 |
gtaaaatagttatacactagcatccaatgag--gccaccatttttccatgacacactgtcagtttaaaaataaccatacaa |
334 |
Q |
| |
|
|||||| |||| ||||||| || ||||||| ||||||||||||||||| |||||| | |||| ||||||||||||||| |
|
|
| T |
32879193 |
gtaaaacagttttacactaacaatcaatgagaagccaccatttttccatgtcacactattggtttcaaaataaccatacaa |
32879113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 31284703 - 31284749
Alignment:
| Q |
290 |
accatttttccatgacacactgtcagtttaaaaataaccatacaatg |
336 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
31284703 |
accatttttccatgtcacacaatcagtttcaaaataaccatacaatg |
31284749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University