View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_101 (Length: 292)

Name: NF16561_low_101
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_101
NF16561_low_101
[»] chr5 (8 HSPs)
chr5 (18-284)||(12531358-12531624)
chr5 (18-275)||(12547004-12547261)
chr5 (22-269)||(9866668-9866916)
chr5 (165-273)||(9869994-9870102)
chr5 (30-257)||(9894527-9894748)
chr5 (136-254)||(38735501-38735619)
chr5 (30-113)||(9869893-9869976)
chr5 (227-284)||(12538673-12538730)
[»] chr2 (5 HSPs)
chr2 (22-275)||(13576218-13576471)
chr2 (31-275)||(34571451-34571695)
chr2 (25-249)||(34578945-34579169)
chr2 (25-249)||(34584694-34584918)
chr2 (25-275)||(34562657-34562910)
[»] chr8 (9 HSPs)
chr8 (18-275)||(43479679-43479936)
chr8 (25-275)||(25865573-25865823)
chr8 (31-275)||(26592047-26592291)
chr8 (25-275)||(41943817-41944067)
chr8 (19-275)||(38799362-38799618)
chr8 (19-275)||(38821899-38822155)
chr8 (175-275)||(44343978-44344078)
chr8 (202-275)||(38807046-38807119)
chr8 (25-107)||(44343874-44343958)
[»] chr7 (3 HSPs)
chr7 (18-275)||(3929966-3930223)
chr7 (22-275)||(21317444-21317697)
chr7 (58-273)||(3928616-3928831)
[»] scaffold0197 (1 HSPs)
scaffold0197 (22-275)||(30882-31134)
[»] chr4 (7 HSPs)
chr4 (22-284)||(24860416-24860678)
chr4 (46-272)||(34748649-34748875)
chr4 (136-254)||(53290720-53290838)
chr4 (58-137)||(40035830-40035909)
chr4 (96-146)||(44771103-44771153)
chr4 (178-269)||(40036062-40036153)
chr4 (58-137)||(40045155-40045234)
[»] chr1 (4 HSPs)
chr1 (175-275)||(7594136-7594236)
chr1 (128-209)||(17769233-17769314)
chr1 (47-137)||(7594402-7594492)
chr1 (131-209)||(1539185-1539263)
[»] chr3 (1 HSPs)
chr3 (128-209)||(27440873-27440954)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 12531358 - 12531624
Alignment:
Q  18 cagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgt 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  12531358 cagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgt 12531457  T
Q  118 gaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgagg 217  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12531458 gaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaag 12531557  T
Q  218 atactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcatctcactcg 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  12531558 atactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcg 12531624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 12547261 - 12547004
Alignment:
Q  18 cagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgt 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  12547261 cagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgt 12547162  T
Q  118 gaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgagg 217  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12547161 gaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaag 12547062  T
Q  218 atactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12547061 atactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 12547004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 9866916 - 9866668
Alignment:
Q  22 ttccgtcctggaactgttgcacttcgtgagatccgcaag--tatcagaagagtaccgagcttctgataaggaagcttccattccagagact--tgttcgt 117  Q
    |||||||||||||| ||||| |||||||||||||| |||  || || ||||| |  ||||||||  ||||||||||||| || ||||||||  | |  |     
T  9866916 ttccgtcctggaaccgttgcgcttcgtgagatccgtaagagtaccaaaagagcattgagcttct--taaggaagcttccgtttcagagactgatctgagg 9866819  T
Q  118 gaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgagg 217  Q
    |||| |||  |||||||||| || |||||  | ||| | || |||| ||||||||||||||||||||||||| |||  |||||||||||||||||||| |    
T  9866818 gaaa-cgcgaaggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagactatcttgttggtttgtttgaag 9866720  T
Q  218 atactaatctctgtgccattcatgctaagagggttactatcatgcctaagga 269  Q
    ||||||| || ||||| |||||||||||||| |||||||| |||||| ||||    
T  9866719 atactaacctttgtgctattcatgctaagagagttactattatgcctgagga 9866668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 273
Target Start/End: Original strand, 9869994 - 9870102
Alignment:
Q  165 tgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcct 264  Q
    ||||| || |||||||||||||| |||||||||| |||||||||||||| | |||| |||||| || || |||||||||||||| |||||||| ||||||    
T  9869994 tgtttatggtcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcct 9870093  T
Q  265 aaggatatt 273  Q
    |||||||||    
T  9870094 aaggatatt 9870102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 9894527 - 9894748
Alignment:
Q  30 tggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcag 129  Q
    |||||| ||||| |||||||||||||| || || |||| ||| ||     |||| |||||||||||||| || |||||||||||  | ||||| ||||||    
T  9894527 tggaacggttgctcttcgtgagatccgtaattaccagaggagcac-----ttctaataaggaagcttccgtttcagagacttgtgagggaaattgctcag 9894621  T
Q  130 gatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctct 229  Q
    |||| ||| || | |||  | ||||| || ||||||||||||||| ||||||||| || |||||||| | ||||| |||||||||| ||||||||| | |    
T  9894622 gatt-caagactggtctgaggttccagagtagtgctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatattt 9894720  T
Q  230 gtgccattcatgctaagagggttactat 257  Q
    | || |||||||||||| | ||||||||    
T  9894721 gcgctattcatgctaagtgagttactat 9894748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 38735501 - 38735619
Alignment:
Q  136 aaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgcca 235  Q
    |||||||||||  | ||||| ||||  |||||||||||||||||| |||    ||||| ||||||||||||||||||||| |||||||| || ||| | |    
T  38735501 aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta 38735600  T
Q  236 ttcatgctaagagggttac 254  Q
    |||||||||||||||||||    
T  38735601 ttcatgctaagagggttac 38735619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 9869893 - 9869976
Alignment:
Q  30 tggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgt 113  Q
    |||||| ||||| |||||||||||||| ||||| |||||||| || |||||||| |||||||||||||| ||  ||||||||||    
T  9869893 tggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagcttctaataaggaagcttccgttttagagacttgt 9869976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 12538673 - 12538730
Alignment:
Q  227 tctgtgccattcatgctaagagggttactatcatgcctaaggatattcatctcactcg 284  Q
    ||||||| |||||||||||||| ||||||||||||||||| | |||||| ||||||||    
T  12538673 tctgtgctattcatgctaagagagttactatcatgcctaaaggtattcaactcactcg 12538730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 13576218 - 13576471
Alignment:
Q  22 ttccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaa 121  Q
    |||||||||||||| || || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| | ||||| ||||    
T  13576218 ttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaa 13576317  T
Q  122 tcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac 221  Q
    | ||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13576318 ttgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac 13576417  T
Q  222 taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
     ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  13576418 gaatctttgtgctattcatgctaagagggttactattatgcctaaggatattca 13576471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 275
Target Start/End: Complemental strand, 34571695 - 34571451
Alignment:
Q  31 ggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcagg 130  Q
    ||||| ||||| ||||||||||| || |||||||||||||||||||| ||| ||||  | || |||||||||||| | |||||||||||||| |||||||    
T  34571695 ggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagg 34571596  T
Q  131 atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctg 230  Q
    ||||||| || ||| | |||||||| |||  ||| |||   || ||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | ||    
T  34571595 atttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtg 34571496  T
Q  231 tgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
    ||| |||||||||||||||||||| || |||||||||||||||||    
T  34571495 tgcaattcatgctaagagggttaccattatgcctaaggatattca 34571451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 34579169 - 34578945
Alignment:
Q  25 cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg 124  Q
    ||||||||||| ||||| ||||||||||| || |||||||||||| ||||||| ||| ||||  | || |||||||||||| | |||||||||||||| |    
T  34579169 cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattg 34579070  T
Q  125 ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa 224  Q
    ||||| ||||||| |||||| |  ||||||| |||  ||| |||   || ||||| ||||| |  ||||||||| | |||||||||||||||||||| ||    
T  34579069 ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa 34578970  T
Q  225 tctctgtgccattcatgctaagagg 249  Q
    | | ||||| |||||||||||||||    
T  34578969 tttgtgtgcaattcatgctaagagg 34578945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 34584918 - 34584694
Alignment:
Q  25 cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg 124  Q
    ||||||||||| ||||| ||||||||||| || |||||||||||| ||||||| ||| ||||  | || |||||||||||| | |||||||||||||| |    
T  34584918 cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattg 34584819  T
Q  125 ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa 224  Q
    ||||| ||||||| |||||| |  ||||||| |||  ||| |||   || ||||| ||||| |  ||||||||| | |||||||||||||||||||| ||    
T  34584818 ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa 34584719  T
Q  225 tctctgtgccattcatgctaagagg 249  Q
    | | ||||| |||||||||||||||    
T  34584718 tttgtgtgcaattcatgctaagagg 34584694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 275
Target Start/End: Complemental strand, 34562910 - 34562657
Alignment:
Q  25 cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg 124  Q
    ||||||||||| ||||| ||||| ||||| || || || ||||||||| |||| ||| ||||  | ||||||||||||||| | |||||||||||||| |    
T  34562910 cgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattg 34562811  T
Q  125 ctcagg---atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac 221  Q
    |||| |   || ||||  | ||| |  ||||||| ||   ||| |||   || ||||| ||||| || ||||| ||| | ||||||||||||||||||||    
T  34562810 ctcatgttgatctcaagccggatttcagattccagagtcatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggatac 34562711  T
Q  222 taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
     ||| | ||||| |||||||||||||||||||| || |||||||||||||||||    
T  34562710 caatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattca 34562657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 43479936 - 43479679
Alignment:
Q  18 cagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgt 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| | ||| |     
T  43479936 cagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggttagg 43479837  T
Q  118 gaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgagg 217  Q
    ||||||||||||||||||||||| |||||  | ||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  43479836 gaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgttggtttgtttgaag 43479737  T
Q  218 atactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
    ||||||| || || || |||||||||||||||||||| || |||||||||||||||||    
T  43479736 atactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattca 43479679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 25865573 - 25865823
Alignment:
Q  25 cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg 124  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||| ||||  | ||||||||||||||| | |||||||||||||| |    
T  25865573 cgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattg 25865672  T
Q  125 ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa 224  Q
    |||||||||||||||| |||||  |||| || ||   |||||||  ||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  25865673 ctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaa 25865772  T
Q  225 tctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
    | | ||||| ||||||||||||||||| || || ||||| |||||||||||    
T  25865773 tttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattca 25865823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 275
Target Start/End: Original strand, 26592047 - 26592291
Alignment:
Q  31 ggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcagg 130  Q
    ||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||| ||  | || ||||| |||||| | ||||||||||| || |||||||    
T  26592047 ggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcagg 26592146  T
Q  131 atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctg 230  Q
    ||||||| || ||||| || || || |||  |||||| || || || |||||||| || || |||||||||||||| ||||||||||||||||| |||||    
T  26592147 atttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctg 26592246  T
Q  231 tgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
     || |||||||||||| | ||||||||||||||||||||||||||    
T  26592247 cgctattcatgctaagcgtgttactatcatgcctaaggatattca 26592291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 41943817 - 41944067
Alignment:
Q  25 cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg 124  Q
    |||||||| || |||||||||||||||||||| || || ||||||||||| || ||| ||||  | ||||||||||||||  | |||||||||||||| |    
T  41943817 cgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttccattccaacgtcttgttcgtgaaattg 41943916  T
Q  125 ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa 224  Q
    |||| |||||||| || |||||  ||||||| |||  |||||||  ||| ||||| ||||| || ||||||||||| ||||| |||||||||||||| ||    
T  41943917 ctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgtttgaggataccaa 41944016  T
Q  225 tctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
    | | ||||| |||||||||||||||||||| || ||||| ||||| |||||    
T  41944017 tttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattca 41944067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 38799362 - 38799618
Alignment:
Q  19 agattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtg 118  Q
    |||||| | ||||||||||||||  |  | |||||||| |||||||||||||| || |||||||| ||  | || |||||||||||  | ||||||||||    
T  38799362 agattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtg 38799461  T
Q  119 aaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgagga 218  Q
    |||| ||||| |||||||| ||||||||  ||||||| ||||| || ||||| ||||||||||||||||||||||||||  | |||||| | ||||| ||    
T  38799462 aaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaaga 38799561  T
Q  219 tactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
     || || || ||||| |||||||||||||| ||||| |||||||||||||| |||||    
T  38799562 cacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattca 38799618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 38822155 - 38821899
Alignment:
Q  19 agattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtg 118  Q
    |||||| | ||||||||||||||  |  | |||||||| |||||||||||||| || |||||||| ||  | || |||||||||||  | ||||||||||    
T  38822155 agattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtg 38822056  T
Q  119 aaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgagga 218  Q
    |||| ||||| |||||||| ||||||||  ||||||| ||||| || ||||| ||||||||||||||||||||||||||  | |||||| | ||||| ||    
T  38822055 aaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaaga 38821956  T
Q  219 tactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
     || || || ||||| |||||||||||||| ||||| |||||||||||||| |||||    
T  38821955 cacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattca 38821899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 44343978 - 44344078
Alignment:
Q  175 cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 274  Q
    ||||| ||||| ||||| |||||||| || || |||||||||||||| ||| | ||||| ||||||||||||||||| || || ||||| ||||||||||    
T  44343978 cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc 44344077  T
Q  275 a 275  Q
    |    
T  44344078 a 44344078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 38807046 - 38807119
Alignment:
Q  202 gttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
    |||||| | |||||||| || ||||  || || |||||||||||||| |||||||||||||||||||| |||||    
T  38807046 gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattca 38807119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 44343874 - 44343958
Alignment:
Q  25 cgtcctggaactgttgcacttcgtgaga--tccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagag 107  Q
    ||||||||||| ||||| ||||||||||  || | |||||||||||||||||| | ||| ||||  | |||||||| ||||||||    
T  44343874 cgtcctggaaccgttgctcttcgtgagagatctgtaagtatcagaagagtaccaaacttttgatccgtaagcttcccttccagag 44343958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 7e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 3930223 - 3929966
Alignment:
Q  18 cagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgt 117  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||| ||| | ||||||    
T  3930223 cagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttcgt 3930124  T
Q  118 gaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgagg 217  Q
    ||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  3930123 gaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgttggtttgtttgaag 3930024  T
Q  218 atactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
    |||| ||||| |||||||||||||||||||| |||||||| ||||| |||||||||||    
T  3930023 atacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattca 3929966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 21317444 - 21317697
Alignment:
Q  22 ttccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaa 121  Q
    |||||||| ||||| || || |||||||| ||||||||||| |||||||| || |||||||||||||| || |||||||||||  | |||||||||||||    
T  21317444 ttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaa 21317543  T
Q  122 tcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac 221  Q
    ||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  21317544 tcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgtttgaagatac 21317643  T
Q  222 taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
     ||||| || || |||||||||||||| |||||||| |||||||||||||||||    
T  21317644 aaatctttgcgctattcatgctaagagagttactattatgcctaaggatattca 21317697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 273
Target Start/End: Complemental strand, 3928831 - 3928616
Alignment:
Q  58 aagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaa 157  Q
    |||||||| ||||  || |||||||| || ||||| ||||| ||| | ||| | |||| |||||||||||||||||||||||| ||||| |||||||| |    
T  3928831 aagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttcatgaaatcgctcaggatttcaaaactgatctccgattccaga 3928732  T
Q  158 gcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactat 257  Q
     ||| |||||||||||||||||||||   |||||||| | | |||||||||||||||| ||||  ||||| ||||| |||||||||||||| ||||||||    
T  3928731 tcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtattgttggtttgtttgaagatatgaatctttgtgctattcatgctaagagagttactat 3928632  T
Q  258 catgcctaaggatatt 273  Q
      ||||||||||||||    
T  3928631 tgtgcctaaggatatt 3928616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 30882 - 31134
Alignment:
Q  22 ttccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaa 121  Q
    |||||||| ||||| || || |||||||| ||||||||||| |||||||| || |||||||||||||| || |||| ||||||  | |||||||||||||    
T  30882 ttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc-attccaacgtcttgttcgtgaaa 30980  T
Q  122 tcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac 221  Q
    |||||||||||||||||||  ||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30981 tcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatac 31080  T
Q  222 taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 275  Q
     ||||| || || |||||||||||||| |||||||| |||||||||||||||||    
T  31081 aaatctttgcgctattcatgctaagagagttactattatgcctaaggatattca 31134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 24860416 - 24860678
Alignment:
Q  22 ttccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaa 121  Q
    |||||||| ||||| ||||||||||| || ||||||||||| || || || || |||||||| ||  | || |||||||||||  | || ||||||||||    
T  24860416 ttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaa 24860515  T
Q  122 tcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac 221  Q
    ||||||| ||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||||||||||||||| |||||  | ||||| |||||    
T  24860516 tcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactctttgaagatac 24860615  T
Q  222 taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcatctcactcg 284  Q
     ||||| || || |||||||||||||| ||||| || ||||| ||||||||||| ||| ||||    
T  24860616 aaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcg 24860678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 272
Target Start/End: Original strand, 34748649 - 34748875
Alignment:
Q  46 cgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatc 145  Q
    ||||||||||| ||||| |||||||| ||||| || || ||  | || || || |||||| | || |||||||| ||||||||||||||||| || ||||    
T  34748649 cgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatc 34748748  T
Q  146 ttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaa 245  Q
    | || ||||| |||   || || || || || |||||||| ||||| |||||||| |||||| | |||||||||||||| ||||||||||||||||| ||    
T  34748749 tccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggcttatctcgttggtctctttgaggatactaacctctgtgccattcatgccaa 34748848  T
Q  246 gagggttactatcatgcctaaggatat 272  Q
    | | || ||||||||||||||||||||    
T  34748849 gcgtgtcactatcatgcctaaggatat 34748875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 53290720 - 53290838
Alignment:
Q  136 aaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgcca 235  Q
    |||||||||||  | ||||| ||||  | |||||||||||||||| |||  | ||||||||||||||||||||||||||| |||||||| || ||| |||    
T  53290720 aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca 53290819  T
Q  236 ttcatgctaagagggttac 254  Q
    |||||||||||||| ||||    
T  53290820 ttcatgctaagaggattac 53290838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 40035830 - 40035909
Alignment:
Q  58 aagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa 137  Q
    ||||||||||||||||| |||||  |||| |||||||| |||||||||||  | ||||||||||| |||||||| |||||    
T  40035830 aagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaattgctcaggacttcaa 40035909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 44771153 - 44771103
Alignment:
Q  96 tccattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatct 146  Q
    |||||||||  | |||||||||||||||||||||||||||||||| |||||    
T  44771153 tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatct 44771103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
Q  178 caagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaagga 269  Q
    ||||| ||||||||||| |||||||||||| | |||||||| |||||  | ||||| || ||||| ||| | |||||||| ||||| |||||    
T  40036062 caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga 40036153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 40045155 - 40045234
Alignment:
Q  58 aagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa 137  Q
    ||||| ||||||||||| |||||  |||| |||||||| || ||||||||  | ||||||||||| |||||||| |||||    
T  40045155 aagtaccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaattgctcaggacttcaa 40045234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 7594236 - 7594136
Alignment:
Q  175 cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 274  Q
    ||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||| ||||| ||||||||||||||||| || || ||||| ||||||||||    
T  7594236 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 7594137  T
Q  275 a 275  Q
    |    
T  7594136 a 7594136  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 17769314 - 17769233
Alignment:
Q  128 aggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt 209  Q
    ||||||||||||||||||| |||||  | || ||| ||||||||||||||||||||||   || ||||||||||||||||||    
T  17769314 aggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatcttgttggttt 17769233  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 7594492 - 7594402
Alignment:
Q  47 gtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa 137  Q
    |||||||||| ||||| ||||||||||| |||||| ||||  | ||||||||||| ||| | ||||| |||||||| ||||| ||||||||    
T  7594492 gtgagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa 7594402  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 1539263 - 1539185
Alignment:
Q  131 atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt 209  Q
    |||||||||||||||| |||||  | || ||| |||||||| |||||||||||||   || ||||||||||||||||||    
T  1539263 atttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagccagtgtagcttatcttgttggttt 1539185  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 27440873 - 27440954
Alignment:
Q  128 aggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt 209  Q
    ||||||||||||||||||| |||||  | || ||   |||||||||||||||||||||   || ||||||||||||||||||    
T  27440873 aggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatcttgttggttt 27440954  T

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