View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_11 (Length: 614)
Name: NF16561_low_11
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 145 - 598
Target Start/End: Complemental strand, 42159632 - 42159165
Alignment:
| Q |
145 |
aagttaattgcttttctaaaatgaatttctagaagctagatcttcgtacttgttggtggttaagatt-gagaaaatccattttaaacctttttaacccaa |
243 |
Q |
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| T |
42159632 |
aagttaattgcttttctaaaatgaatttctagaagctagatcttcgtacttgttggtggttaagatttgagaaaatccattttaaacctttttaacccaa |
42159533 |
T |
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| Q |
244 |
atttccaagtagtcaaaaccacatagcaacacgttcagttcaatgaaagcaacaaacccaaggaacagctagcattatatatttcctctctaatacgaca |
343 |
Q |
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| T |
42159532 |
atttccaagtagtcaaaaccacatagcaacacgttcagttcaatgaaagcaacaaacccaaggaacaactagcattatatatttcctctctaatacgaca |
42159433 |
T |
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| Q |
344 |
cattattctacttataggaaactttagtcgctatagacgaagcactttaaaaatcatttcagaaagaaaaa-------------actaatctactatata |
430 |
Q |
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| T |
42159432 |
cattcttctacttataggaaactttagtcgctatagacgaagcactttaaaaatcatttcagaaagaaaaaaaattatatacatactaatctactatata |
42159333 |
T |
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| Q |
431 |
tagtaagaagatatatatgttatctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcg |
530 |
Q |
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| T |
42159332 |
tagtaagaagatatatatgttatctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcg |
42159233 |
T |
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| Q |
531 |
tagttgggcgtcgacgagtttccgggacgtatggacggcaacagcagcggccattcccgacgtgtttg |
598 |
Q |
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| T |
42159232 |
tagttgggcgtcgacgagtttccgggacgtatggacggcaacagcagcgtccattcccgacgtgtttg |
42159165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 42159799 - 42159661
Alignment:
| Q |
10 |
attatacttcaacattaataatttactatacagtgttttagcaataataatttaccatacatgtatactaaaaatatccattcgaaac--aaacaaacaa |
107 |
Q |
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| T |
42159799 |
attatacttcaacattaataatttactatacagtgttttagcaataataatttaccatacatgtatactaaaaatatccattcgaaacaaaaaaaaaaaa |
42159700 |
T |
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| Q |
108 |
aaatgtacactaaaaatatcacttaggagtaaaccaaaa |
146 |
Q |
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| T |
42159699 |
aaatgtacactaaaaatatcacttaggagtaaaccaaaa |
42159661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 453 - 596
Target Start/End: Complemental strand, 42180284 - 42180141
Alignment:
| Q |
453 |
tctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagttgggcgtcgacgagtttc |
552 |
Q |
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| T |
42180284 |
tctgtttgagaaactagttagtaaaatggcatccgtattggcaggggatgaggtgacaatatcaacaagtagtagtcggagttggaagtcgatgagtttc |
42180185 |
T |
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| Q |
553 |
cgggacgtatggacggcaacagcagcggccattcccgacgtgtt |
596 |
Q |
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| T |
42180184 |
caggacatatggacagcaacagcaggggcagttcccgacgtgtt |
42180141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 458 - 535
Target Start/End: Complemental strand, 42146992 - 42146915
Alignment:
| Q |
458 |
ttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagtt |
535 |
Q |
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| T |
42146992 |
ttgagaaattagttagtaaaatggcatcggtaatggcaagggatgaggtgacaatatcaacaagcagtcgtcggagtt |
42146915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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