View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16561_low_112 (Length: 271)
Name: NF16561_low_112
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_112 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0475 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 4574567 - 4574819
Alignment:
| Q |
1 |
cataacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4574567 |
cataacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctctt |
4574666 |
T |
|
| Q |
101 |
gtggacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4574667 |
gtggacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgat |
4574766 |
T |
|
| Q |
201 |
ccacaaaaagggttttttgctgttggccaaaccccaagcaaactctacgagct |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4574767 |
ccacaaaaagggttttttgctgttggccaaaccccaagcaaactctacgagct |
4574819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4560768 - 4561010
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4560768 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgatgggtggttcaatactttctcttgtg |
4560867 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4560868 |
gacaccaacttgctattagtcctctatctgaaatttctttc-aaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
4560966 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4560967 |
taaaaatggtttcttgctgttggccaaaccccaagcaaactcta |
4561010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 253
Target Start/End: Complemental strand, 4267036 - 4266787
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||| ||||| ||||||| |
|
|
| T |
4267036 |
aacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccaatcgaagggtggttcaacactttatcttgtg |
4266937 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
4266936 |
gacaccaacttgctattagtcctctatctgaaatttctttaaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatcca |
4266837 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactctacgagct |
253 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4266836 |
caaaaaagggttcttgctgttggccaaaccccaagcaaactctaagagct |
4266787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 4490225 - 4489982
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| |||||||||||||| || || || ||||||||||||| |||||||||||||||||||| | |||| |||| |||||||| |||||||||| |
|
|
| T |
4490225 |
aacattggcactccagcacatatactctccatgattgagttccatccacaatgagtcaagaatccaccaattgaagggtgattcaataccttctcttgtg |
4490126 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4490125 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgacaacacctgtgagccaccaataacaagatcaggcctaatgatcca |
4490026 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
4490025 |
caaaaagggtttcttgctgttggccaaaccccatgcaaactcta |
4489982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 4563973 - 4564211
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||||||||||||| |||| |
|
|
| T |
4563973 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccgccaattgaagggtggttcaatactttctcctgtg |
4564072 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||| |||| ||| |||||||| ||||| || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4564073 |
gacaccaacttgcaattaagcctctatctgaaatttcattcacaaactcagatgacaaaacgactgagccaccaatgacaaggtcaggcctaatgatcca |
4564172 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaa |
242 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
4564173 |
caaaaagggtttattgcaattggccaacccccaagcaaa |
4564211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 4514989 - 4514748
Alignment:
| Q |
6 |
cattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtgga |
105 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || | |||| |||||||||| ||||||||||||||| |
|
|
| T |
4514989 |
cattggcactccagcgcatatgctctcagtggttgagttccatccgcaatgagtcaagaatccgccaattgaagggtggttcaaaactttctcttgtgga |
4514890 |
T |
|
| Q |
106 |
caccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccaca |
205 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| |||| ||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4514889 |
caccaacttgctattaggcctctatctgcaatttcattcacaaactcagacgacaaaaccactgagccaccaatgacaagatcaggcctaatgatccata |
4514790 |
T |
|
| Q |
206 |
aaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
4514789 |
aaaaggttttcttgctattggccaaaccccaagcaaactcta |
4514748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4480955 - 4481198
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||| |
|
|
| T |
4480955 |
aacattggcactccagcacatacactttcagtggttgagttccatccgcaatgagtcaagaatccgccgattgaagggtggttcaaaactttctcttgtg |
4481054 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||| | |||||||| || ||||| ||||||||||||||||||| || |||||| ||||| |
|
|
| T |
4481055 |
gacaccaacttgctattaggcctctatttgaaatttctttcaaatactcagatgacaacaccactgagccaccaatgacaagattagacctaataatcca |
4481154 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
4481155 |
caaaaagttttttttgctattggcaaaaccccaagcaaactcta |
4481198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 3172003 - 3172246
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| | ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || | |||| | |||||||| ||||||||||| | |
|
|
| T |
3172003 |
aacattggcattccagcacatacactttccgtggttgagttccatccgcagtgagtcaagaatccgccaattgaaggatggttcaacactttctcttgcg |
3172102 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||| ||| || ||||| ||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3172103 |
gacaccaacttgctattaggcctctatctgaaatttcattcacaaactccgatgacaaaacaaccgagccaccaatgacaagatcaggcctaataatcca |
3172202 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
3172203 |
caaaaagggtttcttgctgttggctaaaccccaagcaaactcta |
3172246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 4602051 - 4602286
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||| ||||||||||||| |
|
|
| T |
4602051 |
aacatcggcactccagcacatatgctttcagtggttgagttccatccacaatgagtcaagaatccgccgatcgaagggtggttcaacactttctcttgtg |
4602150 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||| |||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4602151 |
gacaccaacttgctattaggcctctatctgaaatttcatttgtaaactcagatgacaaaatcactgagccaccaatgacaagatcaggcctaatgatcca |
4602250 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagc |
239 |
Q |
| |
|
|||||| ||||| | || ||||||||||||||||| |
|
|
| T |
4602251 |
caaaaatggtttatggcaattggccaaaccccaagc |
4602286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 4457858 - 4458106
Alignment:
| Q |
6 |
cattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtgga |
105 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||| |||||||||| ||||| ||||||||| |
|
|
| T |
4457858 |
cattggcactccagcgcatatgctttcagtggttgagtttcatccacaatgagtcaagaatcctccgattgaagggtggttcaacactttatcttgtgga |
4457957 |
T |
|
| Q |
106 |
caccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccaca |
205 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||| |||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
4457958 |
caccaacttgctattaagcctctatcagaagtttcattcacaaaatccgatgacaaaacaaccgagccaccaatgacaagatcaggcctagttatccaca |
4458057 |
T |
|
| Q |
206 |
aaaagggtttt-ttgctgttggccaaaccccaagcaaactctacgagct |
253 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
4458058 |
aaaaaggttttcttgctgttggccaaaacccaagcaaattctaagagct |
4458106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4461385 - 4461628
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |||| ||||||||| ||||| |||||| | |
|
|
| T |
4461385 |
aacatcggcactccagcacatatgctttcagtggttgaattccatccacaatgagtcaagaatccaccaattgaagggtggttcagtacttgctcttgcg |
4461484 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| |||| ||| |||||||| |||| | |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4461485 |
gacaccagcttgctattaggcctctatctgaaatttcattcacaaactcagatgacaaaataaacgagccgccaatgacaagatcaggcctaatgatcca |
4461584 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
4461585 |
taaaaagggtttcttgctatcagccaaaccccaagcaaactcta |
4461628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 4613588 - 4613345
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||| ||||||| ||||||| |||||| | |
|
|
| T |
4613588 |
aacattggcactccagcacatatgctttcagtggttgagttccatccacaatgagtcaagaatccgccaattgaagggtggtttaatacttgctcttgag |
4613489 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| || || ||||| ||||||||||||||||| |||| ||| || ||||| ||||| || ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4613488 |
gacaccagctcgcgattaggcctctatctgaaatttcattcacaaactctgatgacaaaacaactgagccgccaatgacaagatcaggcctaatgatcca |
4613389 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
4613388 |
caaaaagggttgcttgctattcgccaaaccccaagcaaactcta |
4613345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 4617284 - 4617522
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||| ||||| ||||||| |
|
|
| T |
4617284 |
aacattggcactccagcgcatatactttcagtggttgaattccatccgcaatgagtcaagaatcctccgattgaagggtggttcaacactttgtcttgtg |
4617383 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| || ||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
4617384 |
gacaccaacttgctattaggcctctatctgcaatttcatttgtaaactcagatgagaaaatcactgagccaccaatgacaagatcaggccttatgatcca |
4617483 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaa |
242 |
Q |
| |
|
|||||| | ||| |||| |||||||||||||||||||| |
|
|
| T |
4617484 |
caaaaatgatttcttgcaattggccaaaccccaagcaaa |
4617522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 4506121 - 4506362
Alignment:
| Q |
6 |
cattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtgga |
105 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| || || ||||||||||||| | |
|
|
| T |
4506121 |
cattggcactccagcgcatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccaattgaagggtgatttaacactttctcttgtgaa |
4506220 |
T |
|
| Q |
106 |
caccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccaca |
205 |
Q |
| |
|
||||| |||||||| || | ||||||||||||||| || ||| || || || |||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4506221 |
caccagcttgctataaggcttctatctgaaatttcatttgcaaactctgaagacaaaaccactgagccaccaattacaagatcaggcctaatgatccaca |
4506320 |
T |
|
| Q |
206 |
aaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
4506321 |
aaaagggtttcttgctattggccaaaccccaagcaaactcta |
4506362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 4504267 - 4504024
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||| ||||| ||||||| |
|
|
| T |
4504267 |
aacattggcactccagcacaaacactttcagtggttgagttccatccacaatgagtcaagaatcctccgattgaagggtggttcaacactttatcttgtg |
4504168 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||||||||||| |||||||||| ||| |||| |||| |||||||||||| || ||| | ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4504167 |
gacaccaacttgctacaagtcctctattagaagtttcattcacaaaatcagatgacaacacctctgagccaccaataacaagatcaggcctaataatcca |
4504068 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
4504067 |
caaaaaaggtttcttgctattggccaaaccccaagcaaactcta |
4504024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4598433 - 4598676
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||| | ||||| ||||||| |||||| |
|
|
| T |
4598433 |
aacattggcactccggcacatatactttcagtggttgagttccatccgcaatgagttaagaatccaccaattgaaggatggtttaatacttgctcttgca |
4598532 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| ||||| | || ||||||||||||||||| |||| ||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4598533 |
gacaccagcttgcaactaagcctctatctgaaatttcattcacaaactccgatgacaaaacaaccgagccaccaatgacaagatcaggcctaatgatcca |
4598632 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
4598633 |
caaaaagggtttcttgctattggccaaaccccaagcaaagtcta |
4598676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4470065 - 4470308
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |||||| | |
|
|
| T |
4470065 |
aacattggcactccagcgcatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgattgaagggtggttcagtacttgctcttgag |
4470164 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| | | ||||| ||||||||||||||| | || | || || ||||||||||| |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
4470165 |
gacaccagttcacgattaggcctctatctgaaattccatttacaatctctgatgagaaaactaccgagccgccaatgacaagatcgggcctaatgatcca |
4470264 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
4470265 |
caaaaagggttgcttgctatttgccaaaccccaagcaaactcta |
4470308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4592493 - 4592736
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |||| ||||||| ||||||| |||||| | |
|
|
| T |
4592493 |
aacattggaattccagcacatatactttcagtggttgagttccatccacaatgagtcaagaatccaccaattgaagggtggtttaatacttgctcttgag |
4592592 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| || || |||| ||||||||||||||||| |||| ||| || ||||| ||||| | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
4592593 |
gacaccagctcgcgattacgcctctatctgaaatttcattcacaaactccgatgacaaaacaattgtgccaccaatgacaagatcaggcctaatgatcca |
4592692 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
4592693 |
caaaaaaggtttattgcaattggccaaaccccaagcaaactcta |
4592736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4585898 - 4586141
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||| ||||||||||||||| |||||| | |
|
|
| T |
4585898 |
aacattggcactccagcacatatgctttcagtggttgagttccatccacagtgagtcaagaatccaccaattgaagggtggttcaatacttgctcttgcg |
4585997 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
| ||||||| || ||||| ||||||||||||||||| ||| ||| |||||||| ||||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
4585998 |
ggcaccaacccgcgattaggcctctatctgaaatttcattcttaaactcagatgacaaaaccaaggaaccaccaatgacaagatcaggtctaatgatcca |
4586097 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
4586098 |
taaaaaatgttgcttgctattggccaaaccccaagcaaactcta |
4586141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4579694 - 4579937
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||| |||||| | |
|
|
| T |
4579694 |
aacattggaactccagcagatatgctttcagtgattgagttccatccgcaatgagtcaagaatccaccaattgaagggtggttcagtacttgctcttgcg |
4579793 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| || | |||||| ||||||||||||||||| |||| ||| || ||||| ||||| | ||||| || ||||||||||| |||||||||||||| |
|
|
| T |
4579794 |
gacaccagctcgttattaggcctctatctgaaatttcattcacaaactccgatgacaaaacagctgagccgccgatgacaagatcgggcctaatgatcca |
4579893 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||||||||| ||||| || || |||||||| |||||||||| |
|
|
| T |
4579894 |
caaaaagggttgcttgctatttgctaaaccccatgcaaactcta |
4579937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 4626215 - 4626456
Alignment:
| Q |
6 |
cattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtgga |
105 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||| | |||| | ||||||| |||||||||||| ||| |
|
|
| T |
4626215 |
cattggaactccagcgcatatgctttcaatggttgagttccatccacaatgagttaagaatccaccaattgaaggatggttcagtactttctcttgcgga |
4626314 |
T |
|
| Q |
106 |
caccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccaca |
205 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||| ||| ||| || ||||| ||| | ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4626315 |
caccagcttgcgattaggcctctatctgaaatttcattctcaaactcggatgacgaaataaatgagccaccaatcacaagatcaggcctaatgatccaca |
4626414 |
T |
|
| Q |
206 |
aaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
4626415 |
aaaagggtttcttgctatcagccaaaccccaagcaaactcta |
4626456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4516583 - 4516826
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| | || ||||||||||| ||||||||||||||||| || |||||| | |||||||| ||||||||||| | |
|
|
| T |
4516583 |
aacattggtactccggcacagatgctttccattgtggagttccatccacaatgagtcaagaatcctccaactgaaggatggttcaacactttctcttgcg |
4516682 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| |||||||||| |||||||| ||| |||| |||| |||||| ||||| |||| |||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
4516683 |
gacaccagcttgctattacgcctctatccgaagtttcattcacaaaatcggatgacaaaataaccgagccaccaatgacaaggtcaggcctaataatcca |
4516782 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4516783 |
caaaaaaggtttcttgctgttggccaaaccccaagcgaactcta |
4516826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 4622406 - 4622647
Alignment:
| Q |
6 |
cattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtgga |
105 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| | || | ||||||| | ||||| |||||||||| |
|
|
| T |
4622406 |
cattgaaactccagcacatatgctttcggtggttgaattccatccacaatgagtcaagaatccaccaattgcagggtggttaagtacttcctcttgtgga |
4622505 |
T |
|
| Q |
106 |
caccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccaca |
205 |
Q |
| |
|
||||||| ||| ||||| |||||| |||||||||| ||| ||| |||||||| |||| | |||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
4622506 |
caccaacctgcgattaggcctctacctgaaatttcattctcaaactcagatgacaaaataaacgagccgcccatgacaaggtcaggcctaatgatccaca |
4622605 |
T |
|
| Q |
206 |
aaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
4622606 |
aaaagggtttcttgctatcagccaaaccccaagcaaactcta |
4622647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4557387 - 4557630
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |||| | ||||| ||||||| |||||| | |
|
|
| T |
4557387 |
aacattggaactccagcagatatgctttcagtggttgagttccatccacaatgagtcaagaatccaccaattgaaggatggtttaatacttgctcttgcg |
4557486 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
| ||||| | || ||||| ||||||||||||||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
4557487 |
ggcaccagcccgcgattaggcctctatctgaaatttcattgacaaactccgatgacaaaacaactgagccaccgatgacaagatcgggcctaatgatcca |
4557586 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||||||||| ||||| || || |||||||| |||||||||| |
|
|
| T |
4557587 |
caaaaagggttgcttgctatttgctaaaccccatgcaaactcta |
4557630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 4260024 - 4259781
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||| |||||| | |
|
|
| T |
4260024 |
aacattggaacttcggcacaaatgctttcaatggttgagttccatccgcaatgagttaagaatccaccaactgaagagtggttcagtacttgctcttgcg |
4259925 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| || || ||||| |||||||| |||||||| || ||| |||||||| |||| | ||||||||||| | || ||||||||||||||||| |
|
|
| T |
4259924 |
gacaccagctcgcgattaggcctctatccgaaatttcactctcaaactcagatgacaaaataaaggagccaccaataatgaggtcaggcctaatgatcca |
4259825 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
4259824 |
caaaaagggtttcttgctattggccaatccccaagcaaactcta |
4259781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4571234 - 4571477
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||||||||||| | |||||||||| || |||||||||||||| || ||||||||||| ||||| | |||| | |||||||||||||||||||| | |
|
|
| T |
4571234 |
aacattggaactccagtagatatgctttcggtcgttgagttccatccacagtgagtcaagaaaccaccaattgaaggatggttcaatactttctcttgcg |
4571333 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||| |||| ||| || ||||| ||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
4571334 |
agcaccaaccagcaattaggcctctatctgaaatttcattcacaaactccgatgacaaaacaactgagccaccaatgacaagatcgggcctaatgatcca |
4571433 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||||| ||| ||||| || || |||||||| |||||||||| |
|
|
| T |
4571434 |
caaaaagagttgcttgctatttgctaaaccccatgcaaactcta |
4571477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 4299673 - 4299448
Alignment:
| Q |
22 |
catatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtggacaccaacttgctatta |
121 |
Q |
| |
|
|||||||||||| |||||||||||||||| || ||||||||||||||||| | |||| ||||||||| ||||| |||||||||||| | ||||| ||| |
|
|
| T |
4299673 |
catatgctttcaatggttgagttccatccacagtgagtcaagaatccaccaattgaagggtggttcagtacttgttcttgtggacactagcttgcggtta |
4299574 |
T |
|
| Q |
122 |
gtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccacaaaaagggttttttgct |
221 |
Q |
| |
|
| ||||||| ||||||||| ||| ||| |||||||| |||| | | |||| ||||||||||| || |||||||||||||||||||| ||||| ||| |
|
|
| T |
4299573 |
ggcctctatttgaaatttcattctcaaactcagatgacaaaataaacaagccgccaatgacaaggtctggcctaatgatccacaaaaatggtttcctgca |
4299474 |
T |
|
| Q |
222 |
gttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
4299473 |
attggccaaaccccaagcaatctcta |
4299448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 4256481 - 4256251
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||| ||||| |||||| | |
|
|
| T |
4256481 |
aacattggaactccggcacaaatgctttcaatggttgagttccatcctcaatgagtcaagaatccaccaactgaagagtggttcagtacttgctcttgcg |
4256382 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
|||||||||| | |||||||||||||| | ||| |||||||| |||| | |||||||||||||| || |||||||||||||| || |
|
|
| T |
4256381 |
gacaccaactctcgattagtcctctatccg-------------aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgataca |
4256295 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||| ||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
4256294 |
caaaaatggtttcttgctattggccaatccccaagcaaactcta |
4256251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 4568315 - 4568561
Alignment:
| Q |
1 |
cataacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctctt |
100 |
Q |
| |
|
||||||||||| |||| ||||| |||||||| || ||||||||||| |||||||||||||||| || |||||| |||||||||| |||| ||||| |
|
|
| T |
4568315 |
cataacattggtactctggcacaaatgctttccaatgtggagttccatccacaatgagtcaagaatcgtccaactgaagggtggttcaacacttgctctt |
4568414 |
T |
|
| Q |
101 |
gtggacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgat |
200 |
Q |
| |
|
| |||||||| ||||||||| | |||||||| ||| || | |||| ||| || ||||| |||| || ||||||||||||||||| | |||||||||||| |
|
|
| T |
4568415 |
gcggacaccagcttgctatttggcctctatccgaagttccattcacaaactcggatgacaaaataactgagccaccaatgacaagctaaggcctaatgat |
4568514 |
T |
|
| Q |
201 |
ccacaaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||| |||| ||||||| |
|
|
| T |
4568515 |
ccacaaaaaaggtttcttgctgttggcaaaacctcaagagaactcta |
4568561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 4493217 - 4493346
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||| ||||||||| ||| || |||||||||||||| |||||||||||||||||||| | ||| ||||||||| | ||||||||||| |
|
|
| T |
4493217 |
aacattggcactccggcacatatgtttttggtagttgagttccatccacaatgagtcaagaatccaccaatcgaatggtggttcagcagtttctcttgtg |
4493316 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctg |
133 |
Q |
| |
|
|||||||||| || ||||| |||||||||| |
|
|
| T |
4493317 |
gacaccaactagcaattaggcctctatctg |
4493346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 4391996 - 4391885
Alignment:
| Q |
5 |
acattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtgg |
104 |
Q |
| |
|
|||||||||||| || ||| ||||||||| ||| |||||| ||||| ||||| || |||||||||| | | || ||||||||||||||| ||||| || |
|
|
| T |
4391996 |
acattggaactctagaacaaatgctttcaatgggtgagtttcatccacaatgcgttaagaatccacaaattcaagggtggttcaatacttgctctttcgg |
4391897 |
T |
|
| Q |
105 |
acaccaacttgc |
116 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
4391896 |
acaccatcttgc |
4391885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 24103261 - 24103510
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| || ||||| ||||||| |
|
|
| T |
24103261 |
aacattggcactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccaatcgaagggtggtttaacactttatcttgtg |
24103360 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
24103361 |
gacaccaacttgctattagtcctctatctgaaacttctttaaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatcca |
24103460 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactctacgagct |
253 |
Q |
| |
|
|||||| || || ||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
24103461 |
caaaaaagggttcttgctattggccaaaccccaagcaaactctaagagct |
24103510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 27999969 - 27999753
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||| || | || |||| |||||||||| ||||||||||||| |
|
|
| T |
27999969 |
aacattggcactccagcgcatatgctttcggtggttgagttccatccgcagtgagtcaagaacccgctgattgaagggtggttcaaaactttctcttgtg |
27999870 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
27999869 |
gacaccaatttgatattaggcctctatctgaaatttctttcctaaactcagatgacaaaaccactgagccaccaatgacaagattaggcctagtgatcca |
27999770 |
T |
|
| Q |
204 |
caaaaagggttttttgc |
220 |
Q |
| |
|
|||||| ||||| |||| |
|
|
| T |
27999769 |
caaaaaaggtttcttgc |
27999753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 1281376 - 1281614
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
1281376 |
aacattggcactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgattgaagggtggttcaacactttctcttgtg |
1281475 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||| |||| ||| ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
1281476 |
gacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcaggcctagtgatcca |
1281575 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaa |
242 |
Q |
| |
|
|||||| ||||| ||||| || |||| |||||||||||| |
|
|
| T |
1281576 |
caaaaatggtttcttgctattagccagaccccaagcaaa |
1281614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 1674488 - 1674729
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||| |||| |||||||||| ||||||||||||| |
|
|
| T |
1674488 |
aacattggcactccagcgcatatgctttcagtggttgagttccatccgcagtgtgtcaagaatccgccgattgaagggtggttcaacactttctcttgtg |
1674587 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1674588 |
gacaccaatttgatattaggcctctatctgaaatttctttcataaactcagatgacaaaaccactgagccaccaatgacaagatcaggcctagtgatcca |
1674687 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactc |
245 |
Q |
| |
|
|||||| ||||| |||| | ||||||||||||||||||||| |
|
|
| T |
1674688 |
caaaaaaggtttcttgcaatcggccaaaccccaagcaaactc |
1674729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 20863713 - 20863470
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| |||||||||||||||| |||||||| | |||||||| | |||| | |||||||| || |||||||||| |
|
|
| T |
20863713 |
aacattggcactccagcacatatgctctcaatggttgagttccatccacaatgagttagaaatccaccaattgaaggatggttcaacaccttctcttgtg |
20863614 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||| |||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20863613 |
gacaccaactcgcgattaggcctctatctgaaatttcattcacaaacgcagatgaaaaaatcaccgagccaccaatgacaagatcaggcctaatgatcca |
20863514 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
20863513 |
caaaaagggtttcttgctgttggccaaaccccatgcaaactcta |
20863470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 16686137 - 16685894
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||| | ||||| ||||||| |||||| | |
|
|
| T |
16686137 |
aacattggaactccagcatatatactttcagtggttgagttccatccacaatgagttaagaatccaccgattgaaggatggtttaatacttgctcttgcg |
16686038 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
| ||||| || || ||||| | ||||||||| ||||| ||| ||| |||||||| |||||||| || || | |||||||||||||| |||||||||||| |
|
|
| T |
16686037 |
ggcaccagctcgcgattaggcttctatctgagatttcattcttaaactcagatgacaaaaccacggaaccgcaaatgacaagatcagacctaatgatcca |
16685938 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
||| ||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
16685937 |
ttgaaaatgttgcttgctattggtcaaaccccaagcaaactcta |
16685894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 3587 - 3346
Alignment:
| Q |
6 |
cattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtgga |
105 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| | |||| ||||| ||| ||||| |||||||||| |
|
|
| T |
3587 |
cattggtactccagcgcatatgctttcagtggttgaattccatccacaatgagtcaagaatccaccaattgaagggtggatcagtacttgctcttgtgga |
3488 |
T |
|
| Q |
106 |
caccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccaca |
205 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||| ||| ||| || ||||| |||| | |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3487 |
caccagcttgtgattaggcctctatctgaaatttcattctcaaattctgatgacaaaataaacgagccgccaatgacaagatcaggcctaatgatccaca |
3388 |
T |
|
| Q |
206 |
aaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||| ||||| ||||| | |||||||||||||||||| |||| |
|
|
| T |
3387 |
aaaacggtttcttgctatcggccaaaccccaagcaaattcta |
3346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 4556 - 4313
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||| |||||||| |
|
|
| T |
4556 |
aacattggcactcctacacatatgctttcaatggttgagttccatccgcaatgagtcaagaatccaccaattgaagggtggttcagtacttgctcttgtg |
4457 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| || || ||||| ||||||||||||||||| ||| ||| |||||||| |||| | |||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4456 |
gacaccagctcgcaattaggcctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatcca |
4357 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||||| ||| || | |||| |||| ||||||||||||||| |
|
|
| T |
4356 |
caaaaaggatttcttacaattggtcaaaacccaagcaaactcta |
4313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 3086682 - 3086925
Alignment:
| Q |
4 |
aacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtg |
103 |
Q |
| |
|
|||||||| ||||||||| || ||||||| |||||||||||||| |||||||||||||||||||| | |||| |||| |||||||||| |||||| | |
|
|
| T |
3086682 |
aacattggcactccagcaagtacgctttcaaccgttgagttccatccacaatgagtcaagaatccaccaattgaagggtgattcaatacttgctcttgcg |
3086781 |
T |
|
| Q |
104 |
gacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatcca |
203 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||||||| ||| |||||||| | || | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3086782 |
gacaccagcttgcgattagacctctatctgaaatttctttctcaaactcagatgacataataaaggagccgccaatgacaagatcaggcctaatgatcca |
3086881 |
T |
|
| Q |
204 |
caaaaagggttttttgctgttggccaaaccccaagcaaactcta |
247 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
3086882 |
caaaaatggtttcttgctattggccaaaccccaagcaaactcta |
3086925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 3552 - 3443
Alignment:
| Q |
6 |
cattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtgga |
105 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||||||||||| |||||||| ||||||||||| ||| || |||||||||| |||| ||||| ||| |
|
|
| T |
3552 |
cattggaactccagaacaaatgctttcaatggttgagttccatccacaatgagttaagaatccaccaact-aagggtggttcaacacttgctcttacgga |
3454 |
T |
|
| Q |
106 |
caccaacttgc |
116 |
Q |
| |
|
||||| ||||| |
|
|
| T |
3453 |
caccatcttgc |
3443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 3208 - 3162
Alignment:
| Q |
175 |
ccaatgacaagatcaggcctaatgatccacaaaaagggttttttgct |
221 |
Q |
| |
|
||||||||||| |||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
3208 |
ccaatgacaaggtcagacctaatgatccacacaaagggtttcttgct |
3162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 1351098 - 1351057
Alignment:
| Q |
91 |
actttctcttgtggacaccaacttgctattagtcctctatct |
132 |
Q |
| |
|
|||||||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
1351098 |
actttctcttgtggacaccaacctaccattagtcctctatct |
1351057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University