View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_113 (Length: 269)
Name: NF16561_low_113
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_113 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 24724175 - 24724425
Alignment:
| Q |
1 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagttttaacca |
100 |
Q |
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| T |
24724175 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagttttaacca |
24724274 |
T |
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| Q |
101 |
agcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaaaggtgcaaatcagaattttcttttagagccactgttc |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24724275 |
agcaaatagttttgtttcagggaaaggattaaggcaatacaatcctatcagctttgtggctaaaggtgcaaatcagaattttcttttagagccactgttc |
24724374 |
T |
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| Q |
201 |
aacttcagggatgagcactatacagtttatgtcaaccttcaaggttgatac |
251 |
Q |
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| T |
24724375 |
aacttcagggatgagcactatacagtttatttcaaccttcaaggttgatac |
24724425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 24732887 - 24733137
Alignment:
| Q |
1 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagttttaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |
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| T |
24732887 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagctaaggtgcaagactgcttctgaagctagttttaacca |
24732986 |
T |
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| Q |
101 |
agcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaaaggtgcaaatcagaattttcttttagagccactgttc |
200 |
Q |
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| T |
24732987 |
agcaactagttttgtttccggcaaaggattaaggcaataccatcctatcagctttgttgctaaaggtgcaaaccagaattttcttttagacccattgttc |
24733086 |
T |
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| Q |
201 |
aacttcagggatgagcactatacagtttatgtcaaccttcaaggttgatac |
251 |
Q |
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| T |
24733087 |
aactttagggatgagcattatacagtttatttcaatattcaagattgatac |
24733137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 24693438 - 24693688
Alignment:
| Q |
1 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagttttaacca |
100 |
Q |
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| T |
24693438 |
aatcacaaagcaataaagattgttacgtgtatagcgatatgagctctggttcaggagttaagctaaggtgcaagtctgattctgaagctagttttaacca |
24693537 |
T |
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| Q |
101 |
agcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaaaggtgcaaatcagaattttcttttagagccactgttc |
200 |
Q |
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|||| | ||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||| | ||| ||||||||||||||||||||| ||||| |
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| T |
24693538 |
agcagcaagtttcgtttccgggaaaggattaaggcaataccatcctatcagctttgtggctaaaggaggaaaccagaattttcttttagagccattgttc |
24693637 |
T |
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| Q |
201 |
aacttcagggatgagcactatacagtttatgtcaaccttcaaggttgatac |
251 |
Q |
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||||| |||||||| ||||||||||||||| ||||| |||||||||||||| |
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| T |
24693638 |
aactttagggatgaacactatacagtttatttcaacattcaaggttgatac |
24693688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 24748055 - 24748305
Alignment:
| Q |
1 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagttttaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||| |||||| | ||||||||||| |
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| T |
24748055 |
aatcacaaagcaataaagattgttacgtgcatagtgatatgagcgctggttcaagagttaagctcagatgcaagtctggatctgaagcaagttttaacca |
24748154 |
T |
|
| Q |
101 |
agcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaaaggtgcaaatcagaattttcttttagagccactgttc |
200 |
Q |
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|| ||| ||||| ||||| ||||||||||||||||||||| |||| | ||| ||| |||||||||| ||||| ||||||||| ||||||||||| ||||| |
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| T |
24748155 |
agaaacaagtttcgtttccgggaaaggattaaggcaataccatcctaccagttttttggctaaaggagcaaaccagaattttattttagagccattgttc |
24748254 |
T |
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| Q |
201 |
aacttcagggatgagcactatacagtttatgtcaaccttcaaggttgatac |
251 |
Q |
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||||| ||||||||| |||||||| ||||| |||| |||||| ||||||| |
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| T |
24748255 |
aactttagggatgagaactatacaatttatttcaatattcaagattgatac |
24748305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 24706799 - 24706882
Alignment:
| Q |
147 |
atcagctttgtggctaaaggtgcaaatcagaattttctttt-agagccactgttcaacttcagggatgagcactatacagttta |
229 |
Q |
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|||| ||||||||||||||| | ||| || ||||||||||| ||||||| |||| ||||||| | |||||||| |||||||||| |
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| T |
24706799 |
atcaactttgtggctaaaggaggaaaccataattttctttttagagccattgtttaacttcaagaatgagcacaatacagttta |
24706882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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