View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_116 (Length: 265)
Name: NF16561_low_116
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_116 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 2813623 - 2813738
Alignment:
| Q |
109 |
catagtagtcttacatctgcaaaacgttttattattttgcagtttgtaataacaggaacataatataccaatgattattttaaatttcaaatcatatatt |
208 |
Q |
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| T |
2813623 |
catagtagtcttacatctgcaaaacgttttattattttgcagtttgtaataacaggaacataatatatccatgattattttaaatttcaaatcatatatt |
2813722 |
T |
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| Q |
209 |
atagtggtcatttgtg |
224 |
Q |
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| T |
2813723 |
atagtggtcatttgtg |
2813738 |
T |
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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 2813497 - 2813549
Alignment:
| Q |
18 |
cataggggaagatatgcagcaatgccaatggagacagatacttattcatccga |
70 |
Q |
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| T |
2813497 |
cataggggaagatatgcagcaatgccaatggagacagatacttattcatccga |
2813549 |
T |
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