View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_117 (Length: 264)
Name: NF16561_low_117
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_117 |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 25428044 - 25427969
Alignment:
| Q |
177 |
accaacaatgccttcaattgcatcttccaaacgcagattcagatctcccgccacacccatcccgaccaccaccact |
252 |
Q |
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| T |
25428044 |
accaacaatgccttcaattgcatcttccaaacgcagattcagatctcccgccacacccatcccgaccaccaccact |
25427969 |
T |
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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 25428221 - 25428148
Alignment:
| Q |
14 |
atgaaaagactatcgcgggaaaacgaaatcaacgcgcccatgttttcccgcttaacacaccaactacaaatccc |
87 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25428221 |
atgaaaacagtatcgcgggaaaacgaaatcaacgcgcccatgttttcccgcttaacacaccaactacaaatccc |
25428148 |
T |
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