View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_122 (Length: 256)

Name: NF16561_low_122
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_122
NF16561_low_122
[»] chr8 (14 HSPs)
chr8 (1-121)||(36535873-36535993)
chr8 (52-121)||(5567496-5567565)
chr8 (52-121)||(25249076-25249145)
chr8 (52-121)||(30224300-30224369)
chr8 (1-121)||(3375456-3375584)
chr8 (54-121)||(3379208-3379275)
chr8 (191-238)||(36536024-36536071)
chr8 (1-50)||(5567586-5567635)
chr8 (1-50)||(30224390-30224439)
chr8 (68-121)||(6428810-6428863)
chr8 (1-50)||(6428901-6428950)
chr8 (1-50)||(25249166-25249215)
chr8 (54-121)||(31032097-31032164)
chr8 (13-50)||(31032038-31032075)
[»] chr4 (15 HSPs)
chr4 (1-121)||(23566391-23566510)
chr4 (52-121)||(18656178-18656247)
chr4 (52-121)||(7040431-7040500)
chr4 (52-121)||(23564767-23564836)
chr4 (1-50)||(7040521-7040570)
chr4 (1-50)||(18656268-18656317)
chr4 (64-121)||(3529251-3529308)
chr4 (1-50)||(23564697-23564746)
chr4 (68-121)||(52518829-52518882)
chr4 (68-121)||(52520671-52520724)
chr4 (53-121)||(54296498-54296567)
chr4 (64-120)||(23985845-23985901)
chr4 (2-50)||(52518920-52518968)
chr4 (2-50)||(52520762-52520810)
chr4 (13-50)||(56074680-56074717)
[»] chr3 (6 HSPs)
chr3 (52-121)||(1140071-1140140)
chr3 (1-50)||(17402804-17402853)
chr3 (54-121)||(6789690-6789757)
chr3 (1-50)||(1140161-1140210)
chr3 (1-50)||(6789779-6789829)
chr3 (52-121)||(17402874-17402944)
[»] scaffold0057 (2 HSPs)
scaffold0057 (54-121)||(58856-58923)
scaffold0057 (13-50)||(58945-58982)
[»] chr6 (14 HSPs)
chr6 (54-120)||(1088747-1088813)
chr6 (1-50)||(5377038-5377087)
chr6 (1-50)||(5378893-5378942)
chr6 (52-121)||(19645392-19645461)
chr6 (52-121)||(5376947-5377017)
chr6 (52-121)||(5378802-5378872)
chr6 (1-50)||(1088675-1088724)
chr6 (52-89)||(15149130-15149167)
chr6 (1-50)||(19645322-19645371)
chr6 (2-50)||(8915628-8915676)
chr6 (69-121)||(15866650-15866702)
chr6 (69-121)||(15868462-15868514)
chr6 (2-50)||(20985831-20985879)
chr6 (2-30)||(31528957-31528985)
[»] chr7 (17 HSPs)
chr7 (52-121)||(44963233-44963302)
chr7 (2-50)||(28014296-28014344)
chr7 (49-121)||(4895654-4895727)
chr7 (1-50)||(20046517-20046566)
chr7 (2-50)||(28124610-28124658)
chr7 (2-50)||(28126437-28126485)
chr7 (68-121)||(28124696-28124749)
chr7 (68-121)||(28126523-28126576)
chr7 (1-50)||(44963323-44963372)
chr7 (2-50)||(4895744-4895792)
chr7 (52-121)||(20046587-20046658)
chr7 (50-87)||(4880307-4880345)
chr7 (52-90)||(28014365-28014403)
chr7 (53-90)||(25471864-25471901)
chr7 (2-50)||(8405667-8405715)
chr7 (2-50)||(25471794-25471842)
chr7 (69-121)||(37405559-37405611)
[»] chr2 (4 HSPs)
chr2 (52-121)||(29758190-29758259)
chr2 (1-50)||(29758280-29758329)
chr2 (52-90)||(8759156-8759194)
chr2 (13-50)||(18612074-18612111)
[»] chr1 (7 HSPs)
chr1 (1-50)||(17449470-17449519)
chr1 (55-121)||(17449381-17449446)
chr1 (2-50)||(16808601-16808649)
chr1 (68-121)||(16808687-16808740)
chr1 (69-121)||(9312099-9312151)
chr1 (69-121)||(3282871-3282923)
chr1 (69-121)||(3284572-3284624)
[»] scaffold0189 (1 HSPs)
scaffold0189 (2-50)||(19105-19153)
[»] chr5 (2 HSPs)
chr5 (52-90)||(25076207-25076245)
chr5 (52-90)||(25134176-25134214)
[»] scaffold0006 (1 HSPs)
scaffold0006 (52-81)||(39254-39283)
[»] scaffold0251 (1 HSPs)
scaffold0251 (69-121)||(6296-6348)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 36535873 - 36535993
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagattgaaatgaatagattgataaaagatgatgaatgagtacaacagtattgct 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36535873 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagattgaaatgaatagattgataaaagatgatgaatgagtacaacagtattgct 36535972  T
Q  101 acatatagagattagtttgag 121  Q
    | |||||||||||||||||||    
T  36535973 atatatagagattagtttgag 36535993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 5567565 - 5567496
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  5567565 gaaatgaatagattgataaaagatgatgaatgagtacaatagttttcctatatatagagattagtttgag 5567496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 25249145 - 25249076
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  25249145 gaaatgaatagattgataaaagatcatgaatgagtacaatagtgttcctatatatagagattagtttgag 25249076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 30224369 - 30224300
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  30224369 gaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 30224300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 3375456 - 3375584
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggaga---------ttgaaatgaatagattgataaaagatgatgaatgagtacaac 91  Q
    |||||||||||||| ||||||||||||| |||||| |||||||||||||         | |||||||||||||||| ||||||| ||||||| ||||||     
T  3375456 gtcatagatgtaagtaagatagcaagcaaaagagtactcatgtgggagatactcattgtagaaatgaatagattga-aaaagataatgaatgggtacaat 3375554  T
Q  92 agtattgctacatatagagattagtttgag 121  Q
    ||  || ||| |||||||||||||||||||    
T  3375555 agagttcctatatatagagattagtttgag 3375584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 3379208 - 3379275
Alignment:
Q  54 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||||| ||||||||||||||||| ||| || ||  |||||||||||||||||||    
T  3379208 aatgaatagattgataaaaaatgatgaatgagtacaatagttttccttaatatagagattagtttgag 3379275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 36536024 - 36536071
Alignment:
Q  191 tactaactctagtcgaactattttaacacatgcaactatagagaactt 238  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  36536024 tactaactctagccgaactattttaacacatgcaactatagagaactt 36536071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5567635 - 5567586
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  5567635 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagat 5567586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30224439 - 30224390
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  30224439 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagat 30224390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 6428863 - 6428810
Alignment:
Q  68 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||| ||||| ||| || ||| |||||||||||||||||||    
T  6428863 taaaagatgatgaatgattacaatagtgttcctatatatagagattagtttgag 6428810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6428950 - 6428901
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||||| |||||||||| ||||||||| |||||||| |||||    
T  6428950 gtcatagatgtaagtaagatagcaaacataagagtactcatgtgagagat 6428901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25249215 - 25249166
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||| ||||||||||||||||||||||||| || |||||| |||||||    
T  25249215 gtcatatatgtaagcaagatagcaagcataagggtactcatgagggagat 25249166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 31032097 - 31032164
Alignment:
Q  54 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||||||||||||||||| ||||||||||  |  | | || ||| |||||||||||||||||||    
T  31032097 aatgaatagattgataaaagatcatgaatgagtgtagtaatgttcctatatatagagattagtttgag 31032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 31032038 - 31032075
Alignment:
Q  13 agcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  31032038 agcaagaaagcaagcataagagtactcatgtgggagat 31032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 23566391 - 23566510
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagattgaaatgaa--tagattgataaaagatgatgaatgagtacaacagtattg 98  Q
    ||||||||||||||||||||||||||||||||||| | |||| |||||||   | | ||  |||||||||||||||| |||||||||||||| ||| ||     
T  23566391 gtcatagatgtaagcaagatagcaagcataagagtacccatgagggagat---actcaaagtagattgataaaagataatgaatgagtacaatagtgttc 23566487  T
Q  99 ctacatatagagattagtttgag 121  Q
    ||| |||||||||||||||||||    
T  23566488 ctatatatagagattagtttgag 23566510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 18656247 - 18656178
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  18656247 gaaatgaatagattgataaaagatgatgaatgagtacaatagttttcctatatatagagattagtttgag 18656178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 7040500 - 7040431
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  7040500 gaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 7040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 23564767 - 23564836
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  23564767 gaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 23564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7040570 - 7040521
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  7040570 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagat 7040521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 18656317 - 18656268
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  18656317 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagat 18656268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 3529251 - 3529308
Alignment:
Q  64 ttgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  3529251 ttgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 3529308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23564697 - 23564746
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||| ||||||||||||||||| |||||| |||||||    
T  23564697 gtcatagatgtaagcaaaatagcaagcataagagtactcatgagggagat 23564746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 52518882 - 52518829
Alignment:
Q  68 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||| ||||||||||||| || ||| |||||||||||||||||||    
T  52518882 taaaagatgatgattgagtacaacagtgttcctatatatagagattagtttgag 52518829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 52520724 - 52520671
Alignment:
Q  68 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  52520724 taaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 52520671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 54296567 - 54296498
Alignment:
Q  53 aaatgaatagattgat-aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||| ||||||| ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  54296567 aaatgaattgattgattaaaagatcatgaatgagtacaatagtgttcctatatatagagattagtttgag 54296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 23985901 - 23985845
Alignment:
Q  64 ttgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttga 120  Q
    ||||||||||||| ||||||||||||| ||| || ||| ||||||||||||||||||    
T  23985901 ttgataaaagatggtgaatgagtacaatagtgttcctatatatagagattagtttga 23985845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 52518968 - 52518920
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  52518968 tcatagatgtaagcaagagagcaagcataagagaactcatgtgggagat 52518920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 52520810 - 52520762
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  52520810 tcatagatgtaagaaagagagcaagcataagagtactcatgtgggagat 52520762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 56074680 - 56074717
Alignment:
Q  13 agcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  56074680 agcaagaaagcaagcataagagtactcatgtgggagat 56074717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 1140140 - 1140071
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  1140140 gaaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 1140071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17402804 - 17402853
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17402804 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 17402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 6789757 - 6789690
Alignment:
Q  54 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||||||||| |||||||  ||||||||||||| |||||| ||| |||||||||||||||||||    
T  6789757 aatgaatagattgaaaaaagatagtgaatgagtacaatagtattcctatatatagagattagtttgag 6789690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 1140210 - 1140161
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  1140210 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagat 1140161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6789829 - 6789779
Alignment:
Q  1 gtcatagatgtaagcaa-gatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  6789829 gtcatagatgtaagcaaagatagcaagcataagagtactcatgtgggagat 6789779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 17402874 - 17402944
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 121  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  17402874 gaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 17402944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 58923 - 58856
Alignment:
Q  54 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  58923 aatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 58856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 58982 - 58945
Alignment:
Q  13 agcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  58982 agcaagaaagcaagcataagagtactcatgtgggagat 58945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 1088747 - 1088813
Alignment:
Q  54 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttga 120  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||    
T  1088747 aatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttga 1088813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5377087 - 5377038
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5377087 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 5377038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5378942 - 5378893
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5378942 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 5378893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 19645392 - 19645461
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||| |||||||||||||||||| |||||||||||||| ||| ||  || |||||||||||||||||||    
T  19645392 gaaataaatagattgataaaagataatgaatgagtacaatagtgttcttatatatagagattagtttgag 19645461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 5377017 - 5376947
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 121  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  5377017 gaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 5376947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 5378872 - 5378802
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 121  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  5378872 gaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 5378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1088675 - 1088724
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  1088675 gtcatagatgtaagcaagatagcaaacataagagtactcatatgggagat 1088724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 15149130 - 15149167
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtaca 89  Q
    |||||||||||||||||||||||| |||||||||||||    
T  15149130 gaaatgaatagattgataaaagataatgaatgagtaca 15149167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19645322 - 19645371
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||    
T  19645322 gtcatagatgtaaccaagatagcaagtataagagtactcatgagggagat 19645371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 8915676 - 8915628
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||| ||||    
T  8915676 tcatagatgtaagcaagagagcaagcataagagtactcgtgtggaagat 8915628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 15866702 - 15866650
Alignment:
Q  69 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  15866702 aaaagataatgaatgagtacaatagtgttcctaaatatagagattagtttgag 15866650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 15868514 - 15868462
Alignment:
Q  69 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  15868514 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 15868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 20985831 - 20985879
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||| |||| | |||||||||||||| ||||||||| ||||    
T  20985831 tcatagatgtaatcaagtttgcaagcataagagtactcatgtggtagat 20985879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 31528985 - 31528957
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcata 30  Q
    |||||||||||||||||||||||||||||    
T  31528985 tcatagatgtaagcaagatagcaagcata 31528957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 44963302 - 44963233
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||| ||||||    
T  44963302 gaaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattaatttgag 44963233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 28014296 - 28014344
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28014296 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 28014344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 4895727 - 4895654
Alignment:
Q  49 attgaaatgaatagattgat-aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||| |||||||| |||||| |||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  4895727 attggaatgaatatattgattaaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 4895654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 20046517 - 20046566
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  20046517 gtcatagatgtaagcgagatagcaagcataagagtactcatgtgggagat 20046566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 28124610 - 28124658
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  28124610 tcatagatgtaagcaagagagcaagcataagagtactcatgtgggagat 28124658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 28126437 - 28126485
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  28126437 tcatagatgtaagcaagagagcaagcataagagtactcatgtgggagat 28126485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 28124696 - 28124749
Alignment:
Q  68 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  28124696 taaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28124749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 28126523 - 28126576
Alignment:
Q  68 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  28126523 taaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28126576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 44963372 - 44963323
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||||| ||||||||||||||||||||  ||||| |||||||    
T  44963372 gtcatagatgtaagtaagatagcaagcataagagtattcatgagggagat 44963323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 4895792 - 4895744
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||||||||| ||||| ||||||||| ||||| ||||||||    
T  4895792 tcatagatgtaagcaagagagcaaacataagagtactcatctgggagat 4895744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 20046587 - 20046658
Alignment:
Q  52 gaaatgaatagattgat-aaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 121  Q
    ||||||||||||||||| |||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  20046587 gaaatgaatagattgataaaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 20046658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 4880345 - 4880307
Alignment:
Q  50 ttgaaatgaat-agattgataaaagatgatgaatgagta 87  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  4880345 ttgaaatgaattagattgataaaagatgatgaatgagta 4880307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 28014365 - 28014403
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaa 90  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  28014365 gaaatgaatagattgataaaagatgaataatgagtacaa 28014403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 25471864 - 25471901
Alignment:
Q  53 aaatgaatagattgataaaagatgatgaatgagtacaa 90  Q
    |||||||||||||||||||||||||  |||||||||||    
T  25471864 aaatgaatagattgataaaagatgaataatgagtacaa 25471901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 8405715 - 8405667
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||| |||||||||| |||||||||||||||||  ||||| |||||||    
T  8405715 tcatatatgtaagcaaaatagcaagcataagagtattcatgggggagat 8405667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 25471794 - 25471842
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||| |||||||||||||||||| |  ||| |||||||||    
T  25471794 tcatagatgtaagaaagatagcaagcataagattattcacgtgggagat 25471842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 37405559 - 37405611
Alignment:
Q  69 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  37405559 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 37405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 29758259 - 29758190
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  29758259 gaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 29758190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29758329 - 29758280
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  29758329 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagat 29758280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 8759156 - 8759194
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaa 90  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  8759156 gaaatgaacagattgataaaagatgatgaatgagtacaa 8759194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 18612074 - 18612111
Alignment:
Q  13 agcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  18612074 agcaagaaagcaagcataagagtactcatgtgggagat 18612111  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 17449519 - 17449470
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  17449519 gtcatagatgtaagcaagatagcaagcaaaagagtactcatgtgggagat 17449470  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 17449446 - 17449381
Alignment:
Q  55 atgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||| ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  17449446 atgaatagattga-aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 17449381  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 16808601 - 16808649
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||||    
T  16808601 tcatagatgtaagcaagagagcaagcataagagtactcatgtcggagat 16808649  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 16808687 - 16808740
Alignment:
Q  68 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||||||||||||||||||| ||| ||  || |||||||||||||||||||    
T  16808687 taaaagatgatgaatgagtacaatagtgttcatatatatagagattagtttgag 16808740  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 9312151 - 9312099
Alignment:
Q  69 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  9312151 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 9312099  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 3282923 - 3282871
Alignment:
Q  69 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  3282923 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3282871  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 3284624 - 3284572
Alignment:
Q  69 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  3284624 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3284572  T

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Target: scaffold0189 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 19153 - 19105
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 50  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  19153 tcatagatgtaagcaagatagaaagcataggagtactcatgtgggagat 19105  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 25076207 - 25076245
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaa 90  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  25076207 gaaatgaatatattgataaaagatgatgaaagagtacaa 25076245  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 25134176 - 25134214
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaatgagtacaa 90  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  25134176 gaaatgaatatattgataaaagatgatgaaagagtacaa 25134214  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 81
Target Start/End: Complemental strand, 39283 - 39254
Alignment:
Q  52 gaaatgaatagattgataaaagatgatgaa 81  Q
    ||||||||||||||||||||||||||||||    
T  39283 gaaatgaatagattgataaaagatgatgaa 39254  T

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Target: scaffold0251 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 6348 - 6296
Alignment:
Q  69 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 121  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  6348 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 6296  T

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