View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_131 (Length: 251)
Name: NF16561_low_131
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_131 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 54985540 - 54985769
Alignment:
| Q |
7 |
tagattatactaaaactagaatatgagacttttgcatcaagtaagattcttgcttttgaaatacggaaatattgatttagtactgaatg-agaatttaaa |
105 |
Q |
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| T |
54985540 |
tagactatattaaagctagaatatgagacttttgcatcaagtaagattcttgcttttgaaatacggaaatattgatttagtactgaatggagaatttaaa |
54985639 |
T |
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| Q |
106 |
ctgcaggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggagaac |
205 |
Q |
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| T |
54985640 |
ctgcaggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggagaac |
54985739 |
T |
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| Q |
206 |
ctgctttcagtgttcttgtatcaagattct |
235 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
54985740 |
ctgctttcagtgttcttgtatcaaaattct |
54985769 |
T |
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Back To:
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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 235
Target Start/End: Original strand, 7883207 - 7883332
Alignment:
| Q |
110 |
aggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggagaacctgc |
209 |
Q |
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| T |
7883207 |
aggtagctgtggcacacacaattgggcatgttgctgcaactgtgagtatgtccaaagtagcagtttcattcactcacatcatcaagagtggagaaccagc |
7883306 |
T |
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| Q |
210 |
tttcagtgttcttgtatcaagattct |
235 |
Q |
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| T |
7883307 |
tttcagtgtgctagtatcaagattct |
7883332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 18395987 - 18396104
Alignment:
| Q |
104 |
aactgcaggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggaga |
203 |
Q |
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|||| ||||||||||| ||||| |||||||| ||||| |||||||| || |||||||||||||| || || || |||||||| || ||||| ||||| || |
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| T |
18395987 |
aacttcaggttgctgttgcacacacaattggacatgtcgcggctacggttagtatgtccaaagtggctgtgtcgtttacacatatcatcaagagtggcga |
18396086 |
T |
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| Q |
204 |
acctgctttcagtgttct |
221 |
Q |
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|||||||| |||||||| |
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| T |
18396087 |
gcctgcttttagtgttct |
18396104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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