View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_133 (Length: 250)

Name: NF16561_low_133
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_133
NF16561_low_133
[»] chr1 (1 HSPs)
chr1 (1-244)||(5131460-5131703)
[»] chr5 (8 HSPs)
chr5 (145-203)||(8547085-8547143)
chr5 (138-199)||(8678831-8678892)
chr5 (137-243)||(9004463-9004569)
chr5 (138-199)||(8645323-8645384)
chr5 (137-203)||(2873484-2873550)
chr5 (158-203)||(8530044-8530089)
chr5 (137-200)||(1599251-1599314)
chr5 (18-70)||(8637669-8637721)
[»] chr7 (2 HSPs)
chr7 (141-200)||(35780937-35780996)
chr7 (137-203)||(48360801-48360867)
[»] chr6 (1 HSPs)
chr6 (141-221)||(16717424-16717504)
[»] chr4 (1 HSPs)
chr4 (158-203)||(9444205-9444250)
[»] scaffold0627 (1 HSPs)
scaffold0627 (141-243)||(5711-5810)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5131460 - 5131703
Alignment:
Q  1 ccattactttctgattctttttctccaaagctaatctcacagcccgatgagggcgtttggatttattctcaatctcgtctcttttctccctgatcgattt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5131460 ccattactttcttattctttttctccaaagctaatctcacagcccgaagagggtgtttggatttattctcaatctcgtctcttttctccctgatcgattt 5131559  T
Q  101 agcatcatgaagaggaagcttaaatataggctccagcttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataaggg 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5131560 agcatcacgaagaggaagcttaaatataggctccagcttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataaggg 5131659  T
Q  201 caacatgcattactttttgccccttcatctttcccctttgcttc 244  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  5131660 caacatgcattactttttgccccttcatctttcccttttgcttc 5131703  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 8547143 - 8547085
Alignment:
Q  145 gaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 203  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  8547143 gaagtttaagcagaatgtgggcagtgaggtgagatggaagattatcaaaataagggcaa 8547085  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 8678831 - 8678892
Alignment:
Q  138 ttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagg 199  Q
    ||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  8678831 ttaatgggaagatgaagcaaaatgtgggcaatgatgtgtgatggaagattatcaaagtaagg 8678892  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 9004463 - 9004569
Alignment:
Q  137 cttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaacatgcattactttttgccccttcatctttcccc 236  Q
    |||||||||||| | ||||| |||||||  ||||||||| |||||||||||| |||| |||||||||  | ||| ||||| |||| | ||| |||||||     
T  9004463 cttaatgggaagatgaagcagaatgtggttagtgaggtgagatggaagattagcaaagtaagggcaaagttcatgactttctgcctcatcaactttccct 9004562  T
Q  237 tttgctt 243  Q
    |||||||    
T  9004563 tttgctt 9004569  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 8645323 - 8645384
Alignment:
Q  138 ttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagg 199  Q
    ||||||||||| | |||||| ||||||||| ||| ||||||||||||||||||||| |||||    
T  8645323 ttaatgggaagatgaagcaacatgtgggcaatgatgtgtgatggaagattatcaaagtaagg 8645384  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 2873550 - 2873484
Alignment:
Q  137 cttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 203  Q
    |||||||||||||| ||| | |||||||| ||| | ||| ||||||||||||||||| |||||||||    
T  2873550 cttaatgggaagttgaagaagaatgtgggtagttaagtgagatggaagattatcaaagtaagggcaa 2873484  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 8530044 - 8530089
Alignment:
Q  158 aatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 203  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||    
T  8530044 aatgtgggcagtgaggtgagacggaagtttatcaaaataagggcaa 8530089  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 1599314 - 1599251
Alignment:
Q  137 cttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataaggg 200  Q
    |||||| ||||||| ||||| |||| ||||||||| ||| |||| ||||||||||||| |||||    
T  1599314 cttaataggaagttgaagcagaatgcgggcagtgacgtgagatgaaagattatcaaaaaaaggg 1599251  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 8637669 - 8637721
Alignment:
Q  18 tttttctccaaagctaatctcacagcccgatgagggcgtttggatttattctc 70  Q
    ||||||||||||||||||||| |||| |||  |||||| |||| |||||||||    
T  8637669 tttttctccaaagctaatctcgcagcacgaatagggcgcttgggtttattctc 8637721  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 35780937 - 35780996
Alignment:
Q  141 atgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataaggg 200  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  35780937 atgggaagttgaagcaaaatgtgggcggtgaggtgggatggaagattatcaaaataaggg 35780996  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 48360867 - 48360801
Alignment:
Q  137 cttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 203  Q
    |||||||||||||| ||| | ||||||||||||||||||  ||||||||||||||||||||||||||    
T  48360867 cttaatgggaagttgaaggagaatgtgggcagtgaggtgatatggaagattatcaaaataagggcaa 48360801  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 16717424 - 16717504
Alignment:
Q  141 atgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaacatgcattactttttgcc 221  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||  ||| |||| ||| ||||| ||||    
T  16717424 atgggaagttgaagcaaaatgtgggcggtgaggtgggatggaagaatatcaaaatagtggcgacattcatcactttctgcc 16717504  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 9444205 - 9444250
Alignment:
Q  158 aatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 203  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  9444205 aatgtgggcagtgaggtgagacggaagattatcaaaataagggcaa 9444250  T

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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 5711 - 5810
Alignment:
Q  141 atgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaacatgcattactttttgccccttcatctttcccctttg 240  Q
    |||||||||| ||| |||||||| |  |||||||| ||||||||| |||||||||||   |||||| ||| ||||| |||| | ||| ||||||| ||||    
T  5711 atgggaagttgaagaaaaatgtgagtggtgaggtgggatggaagaatatcaaaataa---caacattcatgactttctgcctcctcaactttcccttttg 5807  T

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