View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_14 (Length: 587)
Name: NF16561_low_14
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 43361219 - 43360841
Alignment:
| Q |
9 |
ctgaaatgaataattggtgaactatttaatttaacttaattctaaaaaagttacagcatattgttagctttcaaaatcatgtatgtttatgtcat--tgt |
106 |
Q |
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| T |
43361219 |
ctgaaatgaataattggtgaactatttaatttaacttaattctaaaaaagttacagcatattgttagctttcaaaatcatgtatatttatgtcatattgt |
43361120 |
T |
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| Q |
107 |
taactacttcttcagttgccaacaagtgagcaataatgcataaagcaaagatcaaatgtggtaatttccactctatgtttaactaacacaatcatggctc |
206 |
Q |
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| T |
43361119 |
taactacttcttcagttgccaacaagtgagcaataatacataaagcaaagatcaaatgtggtaatttccactctatgtttaactaacacaatcatggctc |
43361020 |
T |
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| Q |
207 |
aaatacttcgaggtaaatcacagcttgaatatcaatacacaacaattaacactattnnnnnnntacaacatcaccttcgaaaggacatgacatgttagag |
306 |
Q |
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| T |
43361019 |
aaatacttcgaggtaaatcacagcttgaatatcaatacacaacaaataacactattaaaaaaatacaacatcaccttcgaaaggacatgacatgttagag |
43360920 |
T |
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| Q |
307 |
tactgcaagttttcctccaatgacaatagtagcagctttatagaattgcatgttaaacagtaacagttagaataagata |
385 |
Q |
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| T |
43360919 |
tactgcaagttttcctccaatgacaatagtagcagctttatagaattgcatgttaaacagtaacagttagaataagata |
43360841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 406 - 587
Target Start/End: Complemental strand, 43360844 - 43360663
Alignment:
| Q |
406 |
gatatttggccaagttcaagtgagcttgacatttacagtttttatttttcacgaaattgtttgaagaggaaacatgacagtgcaaacatgcaatataaaa |
505 |
Q |
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| T |
43360844 |
gatatttggccaagttcaagtgagcttgacatttacagcttttatttttcacgaaattgtttgaagaggaaacatgacagtgcaaacatgcaatataaaa |
43360745 |
T |
|
| Q |
506 |
aatctcaagtgttagcaaaagaaatgttatcctcttgaaatttgaaactataaaccatcacagagcagaagtcaccgtaacc |
587 |
Q |
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| T |
43360744 |
aatctcaagtgttagcaaaagaaatgttatcctcttgaaatttgaaactataaaccatcacagagcagaagtcaccgtaacc |
43360663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 524
Target Start/End: Original strand, 49414351 - 49414504
Alignment:
| Q |
384 |
tacttgctaaaggctaacaattgatatttggccaagttcaagtgagcttgacatttacagtttttattt-ttcacgaaattgtttg------------aa |
470 |
Q |
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| T |
49414351 |
tacttgctaaaggctaaagattgatatttggctaagttcaagtgagcttgatatttatgggttttatttatttacaaaattctttgcttgacagcatcaa |
49414450 |
T |
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| Q |
471 |
gaggaaacatgacagtgcaaacatgcaatataaaaaatctcaagtgttagcaaa |
524 |
Q |
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| T |
49414451 |
gatgaaatatgacagtgcaaatgtgcaatgtaaaaaatcttaagtgttagcaaa |
49414504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 343
Target Start/End: Original strand, 49414126 - 49414301
Alignment:
| Q |
168 |
taatttccactctatgtttaactaac--aca-atcatggctcaaatacttcgaggtaaatcacagcttgaatatcaatacacaacaattaacactattnn |
264 |
Q |
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| T |
49414126 |
taatttccactctatgtcgaactaattaacacatcatgtctcaaatactttgaagtaaatcacagcttgaatatcattacacaacaa----caatattca |
49414221 |
T |
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| Q |
265 |
nnnnntacaacatcaccttcgaaaggacat--gacatgttagagtactgcaagttttcctccaatgacaatagtagcagct |
343 |
Q |
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| T |
49414222 |
atta-tacaacatcaccacctaaaggacatatgacatgttagggtactacaaactttcttccaatgacaatagtagtagct |
49414301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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